Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1243 ATGGAAACTGGAAGATTTGGCTTTGTGTCCAAATTTATATTATGCGCAATTTCAGCAGCTCTTGCTGGATGCTTTGCTACTGCTGGAGCCTTCACTGGAGCCATAGCTGGTGCTTTAGCAGCTAAGGCTTCAAAGAGTAGTTTTCTCCAGGGAATTTCATTGGGTGCCGTTGCTGGTGCTATAATCTCGATGGAAGTGTTGGAAGCTTCCCGCGCCTACTGGTTTATGGAGCAAACTGGCTCAAGGGGCACATCATCTATGGCAGATTTCATAGAGGGACTTGTTCGCGGGAGGCTTGTAGAGGAATCACTTACACCTGTTATTTTAACTGCTTATAATTTGCAGTTTGAGCAGGCTCGCTTTTCTCACACAGGATATGATGAGATTCATGACGTTCACAGCTTAGCAGCGTCTTCCCGAGGATTGTCGAGGGATTCATTAAACAATTTACCACATTATGTCGTCTTGAAGGACATAAAGGCAGAGAGTACCTGCTGTACAATATGTTTGCAGGATATTGAAGTAGGAGAAACTGCGAGAACCTTAACTCGATGTCACCATACATTTCATTTGATATGTGTAGACAAATGGCTTGTCAATAATGATTCATGTCCTGTCTGCAGACAGAATGTGTAG 636 0.4371 METGRFGFVSKFILCAISAALAGCFATAGAFTGAIAGALAAKASKSSFLQGISLGAVAGAIISMEVLEASRAYWFMEQTGSRGTSSMADFIEGLVRGRLVEESLTPVILTAYNLQFEQARFSHTGYDEIHDVHSLAASSRGLSRDSLNNLPHYVVLKDIKAESTCCTICLQDIEVGETARTLTRCHHTFHLICVDKWLVNNDSCPVCRQNV* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1243 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 211 IPR013083 -
Lan12g1243 211 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 7 210 - -
Lan12g1243 211 SUPERFAMILY RING/U-box 146 211 - -
Lan12g1243 211 SMART ring_2 166 207 IPR001841 -
Lan12g1243 211 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 7 210 IPR044523 -
Lan12g1243 211 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Lan12g1243 211 Pfam Ring finger domain 166 208 IPR001841 -
Lan12g1243 211 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1243 Lan-Chr12 18404388 18407059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1243 9 211 C3H Transcription Factor Family AT1G74410 53.922 1.06e-67 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1243 - - gmx:100800105 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1243 12 18404388 18407059 Lan1g1043 1 20697946 20700264 LSH