Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1238 ATGTCAGAGCAAGAATCAATTTCTTGCCGCTTCTTATTAGTCTTTTTCTTCATCCTTCTTTCAGGTATTGTTGTTGCTGGGGATTCTTTGGAAACTGATAAACAAGTTCTGTTGATGTTAAAATCCTACCTTGACAATCAAACTGCTACAGACCAAGGAAGGTACACATATTGGAACAAGAGAAGCACCAATCCTTGTGAATGGACAGGGATTTCATGCACCAACATGAGAGTTGTTGGGATAGACTTATCTTCCAATGACATCACCGGAAATTTATTCGCCAATTTCTCTATGCTCACTGAACTCACACACCTTGATCTTTCTTCCAATACCCTCTCTGGTGAGATTCCACAAGACCTGAGGCAGTGCTACAAGCTTTTGCATCTTAACCTCTCTCATAATATTCTCACAGGAGAGCTCAATTTGACTGGCTTGACAAGTTTGCGAACATTGGACTTGTCTACCAATAGAATGGATGGGGAGCTTGGGTTGAATTTCCCTTCCATTTGTGACAATTTAGTTACTTTGAATGTGTCAGATAACAACTTAACTGGTAGGATTGATAATAATGTCTTTGATCAGTGTCTCAGGTTGAAGTACTTGGATTTGAGCACCAACGATCTCAGCGGGGGGATATGGATGGAATTCGCGAGGCTGATAGTGTTTTCTGTCGCTGAGAATCATCTCAGTGGGACTATTCCTTCTGAAGCTTTTCCAGTAGGGAATTGTAGTCTTTCAGAATTAGACCTTTCTCAAAATGGTTTTGTTGGTGGTGCACCAAAGGGTGTTGCTAACTGCAAGAATTTAACCACACTGAACCTTTCAAGTAACCATTTTAATGGGAGTATTCCCATTGAAATGGGATCCATATCAGGTCTCCATGCATTGTACTTGGCGAACAATAGCTTTTCAAGGGATATTCCAGACACCCTTTTAAACTTGACTAATTTGGTTTTCTTGGATTTGAGCCGAAATGGATTTGGTGAAGACATACAAGAGATATTTGGGAAACTTAAGCAAGTGAGATTTCTTCTTTTGCACTCAAATTCTTACAGTAGAGGATTGAATTCATCAGGAATTTTTCAATTGCCATGCATTGTTCGGTTAGACCTAAGCTTCAATAACTTTTCAGGTCCATTGCCTATTGAAATTACTCAAATGTCAAGTCTGAAGTTCTTAATGCTATCCTATAACCAGTTCAGTGGACCTATTCCATCTGAATTTGGAAACATGTTGCGCCTGCAAGCACTTGACATTGGCTCCAACAATTTGAGTGGGCCTATCCCACCAAGTCTTGGAAACTTGACTTCCCTCTTATGGTTAATGCTTGCTAATAACTCAATAACCGGAGAAATTCCTGCCGAGTTGGGAAACTGCTCAAGCTTGCTATGGTTAAACCTCGCCTACAACAAGCTCTACGGAAAATTGCCTTCTGAATTGTCCAAAATTGGAAGAAATGCCATCACCACATTTGAAATAAATAGGAAAGATGATAGAATGATTGCTGGCTCTGGTGAATGTTTAGCAATGAAGAGATGGATACCTGCGGATTACCCTCCATTCAGCTTTGTTTATAGCATCTTAACAAGGAAGAATTGTATAAGCCTTTGGGACAAGATGCTCAAAGGATATGGTCTTTTCCCATTTTGTACACCTGGCTCCTCCTATAGCTTACCTCAGATATCAGGGTATGTTCAGCTAAGTGGGAACCAACTCAGTGGTGATGTTCCGCCAGATATCGCGACAATGGTGAACTTCAGCATGTTACACTTGGGCTTCAACAATTTCTCTGGGAAATTTCCTCCAGAGATGGGAAGTATGCCACTTGTGGTGTTGAACGTGACTAGAAACAGGTTTTCGGGTGAACTTCCCTCGGAAATTGGCAATTGGCAATGTATGCTGAATCTGGATTTGTCTTACAACAATTTCTCTGGGATGTTTCCCACAAGTTTGAACAATTTGAATGAGCTTAACATGTTCAACATCTCATACAATCCCTTCATATCAGGTTCAGTCCCATCAACCGGACAATTCGCTACTTTTGGGAGAGATTCATATTTTGGTGATCCCTTCTTGATTCTTCCCATGTTCATTGACATCAACATCACAAATGATAAAAACATAACCAATCACAATAATGACAAGGAAATAGATACAAATTTGTCTGTATTTTTTGTTTTTCTCGCTATAACGCTGGCTTTCATGATATTTGGAATTCTTACCATTATAGTCTGTGTTATGGTGAAAAGTCCATCTGATGAACCAGGATTCCTCATGAGGGACACAAAACAGTGGCATGATTCAAACAGCTCCGGATCCTCGCCTTGGTTGTATGAAACAGTTAAGGTCATCCGCTTGGACAAGACAGCTTTTACGCATGATGACATCTTGAAAGCAACTTGCAACTTCTCAGAGGATAGGATCATAGGAAAAGGAGGGTTTGGAACAGTGTATAAGGGAGTGTTTCATGATGGTAGAGTAGTGGCAGTGAAGAAGCTCCAAAGGGAAGGACTTGAGGGAGAAAAGGAATTTCATGCTGAAATGGAAGTTCTTTGTGGTCATGGCTTTGGTTGGCCACATCCTAACCTTGTCACACTCCATGGTTGGTGCCTAAATGATTCACAAAAGATACTTGTTTATGAGTACATAGAAGGGGGAAGCTTGGAGGATCTAGTGACTGATAGAGCGCGTTTGACTTGGAGGAGGAGGGTTGAAGTGGCAATTGACGTCGCTAGCGCACTAGTCTATTTACACCATGAATGCAACCCTTCTATTGTGCATAGAGATGTGAAGGCTAGCAATGTGTTGCTAGACAAGGATGGGAAGGCTAAGGTCACAGATTTTGGACTTGCTAGAGTCGTTGATGCAGGGGATAGTCATGTGAGTACAATTGTAGCTGGCACGGTTGGTTATGTTGCACCCGAATATGGACAAACATGGCAAGCTACCACAAAGGGAGATGTGTACAGTTTTGGTGTGCTGGTCATGGAGCTTGCAACAGGAAGAAGAGCGGTCGATGGAGGTGAAGAGTGTTTGGTCGAATGGGGTAGGCGTGCCATGGGTTATGGAAGGCATCATCATGGGTTCAGCAGCCATGCTATGCCGGTTTTGGTGACGGGTACTGAGCTAGTTGGTGGGGCTGAGGAGATGGCTGAGCTGCTAAGGATTGGGGTCAAGTGCACGGCTGAGTCACCGCAGGCTAGGCCTAACATGAAGGAGGTTTTAGCTATGTTGGTTAGGATATTTGTCCCCAAGGGAGACTCAAATCTTGGAAACTTTGGTTAG 3285 0.4231 MSEQESISCRFLLVFFFILLSGIVVAGDSLETDKQVLLMLKSYLDNQTATDQGRYTYWNKRSTNPCEWTGISCTNMRVVGIDLSSNDITGNLFANFSMLTELTHLDLSSNTLSGEIPQDLRQCYKLLHLNLSHNILTGELNLTGLTSLRTLDLSTNRMDGELGLNFPSICDNLVTLNVSDNNLTGRIDNNVFDQCLRLKYLDLSTNDLSGGIWMEFARLIVFSVAENHLSGTIPSEAFPVGNCSLSELDLSQNGFVGGAPKGVANCKNLTTLNLSSNHFNGSIPIEMGSISGLHALYLANNSFSRDIPDTLLNLTNLVFLDLSRNGFGEDIQEIFGKLKQVRFLLLHSNSYSRGLNSSGIFQLPCIVRLDLSFNNFSGPLPIEITQMSSLKFLMLSYNQFSGPIPSEFGNMLRLQALDIGSNNLSGPIPPSLGNLTSLLWLMLANNSITGEIPAELGNCSSLLWLNLAYNKLYGKLPSELSKIGRNAITTFEINRKDDRMIAGSGECLAMKRWIPADYPPFSFVYSILTRKNCISLWDKMLKGYGLFPFCTPGSSYSLPQISGYVQLSGNQLSGDVPPDIATMVNFSMLHLGFNNFSGKFPPEMGSMPLVVLNVTRNRFSGELPSEIGNWQCMLNLDLSYNNFSGMFPTSLNNLNELNMFNISYNPFISGSVPSTGQFATFGRDSYFGDPFLILPMFIDINITNDKNITNHNNDKEIDTNLSVFFVFLAITLAFMIFGILTIIVCVMVKSPSDEPGFLMRDTKQWHDSNSSGSSPWLYETVKVIRLDKTAFTHDDILKATCNFSEDRIIGKGGFGTVYKGVFHDGRVVAVKKLQREGLEGEKEFHAEMEVLCGHGFGWPHPNLVTLHGWCLNDSQKILVYEYIEGGSLEDLVTDRARLTWRRRVEVAIDVASALVYLHHECNPSIVHRDVKASNVLLDKDGKAKVTDFGLARVVDAGDSHVSTIVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATGRRAVDGGEECLVEWGRRAMGYGRHHHGFSSHAMPVLVTGTELVGGAEEMAELLRIGVKCTAESPQARPNMKEVLAMLVRIFVPKGDSNLGNFG* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1238 1094 SMART serkin_6 803 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1238 1094 ProSiteProfiles Leucine-rich repeat profile. 125 146 IPR001611 GO:0005515
Lan12g1238 1094 CDD STKc_IRAK 809 1081 - -
Lan12g1238 1094 SUPERFAMILY RNI-like 75 285 - -
Lan12g1238 1094 Gene3D Ribonuclease Inhibitor 32 142 IPR032675 -
Lan12g1238 1094 Pfam Leucine Rich Repeat 413 435 IPR001611 GO:0005515
Lan12g1238 1094 Gene3D Ribonuclease Inhibitor 240 356 IPR032675 -
Lan12g1238 1094 Gene3D Transferase(Phosphotransferase) domain 1 883 1087 - -
Lan12g1238 1094 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 1085 - -
Lan12g1238 1094 Gene3D Phosphorylase Kinase; domain 1 768 882 - -
Lan12g1238 1094 ProSitePatterns Serine/Threonine protein kinases active-site signature. 925 937 IPR008271 GO:0004672|GO:0006468
Lan12g1238 1094 Gene3D Ribonuclease Inhibitor 143 239 IPR032675 -
Lan12g1238 1094 ProSiteProfiles Protein kinase domain profile. 803 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1238 1094 Pfam Leucine rich repeat N-terminal domain 31 73 IPR013210 -
Lan12g1238 1094 SMART LRR_typ_2 99 123 IPR003591 -
Lan12g1238 1094 SMART LRR_typ_2 314 337 IPR003591 -
Lan12g1238 1094 SMART LRR_typ_2 387 410 IPR003591 -
Lan12g1238 1094 SMART LRR_typ_2 435 459 IPR003591 -
Lan12g1238 1094 PRINTS Leucine-rich repeat signature 102 115 - -
Lan12g1238 1094 PRINTS Leucine-rich repeat signature 145 158 - -
Lan12g1238 1094 Pfam Protein kinase domain 804 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1238 1094 SUPERFAMILY L domain-like 219 669 - -
Lan12g1238 1094 Gene3D Ribonuclease Inhibitor 551 701 IPR032675 -
Lan12g1238 1094 Gene3D Ribonuclease Inhibitor 357 497 IPR032675 -
Lan12g1238 1094 Pfam Leucine Rich repeat 102 115 IPR001611 GO:0005515
Lan12g1238 1094 Pfam Leucine Rich repeat 266 281 IPR001611 GO:0005515
Lan12g1238 1094 ProSitePatterns Protein kinases ATP-binding region signature. 809 832 IPR017441 GO:0005524
Lan12g1238 1094 SUPERFAMILY Protein kinase-like (PK-like) 786 1079 IPR011009 -
Lan12g1238 1094 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 1085 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1238 Lan-Chr12 18364732 18368451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1238 10 1078 Receptor kinase-like Gene Family AT1G55610 31.323 1.95e-144 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Lan12g1238 Pkinase 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1238 - - gmx:100816573 1667.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1238 12 18364732 18368451 Lan1g0109 1 825698 829619 LSH