Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan12g1233 | ATGGAAGAAGTTCAAGAATTGATGAAACAACAACACGCGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTAGGGGGTCACATGAGGTCTCATATCACAAATTTGTCATCATCAGCTGAAACTGAAGACAAAGAAAAAGTTGTTGGTTCTGAAGCTGGATATGGAACAACAATTAACACCGGCTACGGTTTAAGGGAGAATCCAAAGAAGACTTGGAGGATTGCAGATTCAACAGGTGAAGAAACTTCGTTCACTCTCGCTATTGAAAGGTTCTGTAGAGAGTGTGGCAAAGGATTTCACTCTTGGAAAGCCTTGTTTGGCCACATGAAATGTCACTCTGACAAACAAAGAGTTTCCAACAACTTAGTGGAGGATCAAGATTCTGTCACTAACAACAATGCTAAGATGGTCTTGTTGGATAGCCAATCTGATAATGAAGCAGTTGCTCCAAGTAAGAGAAGAAGATCAAAAAGAAGAAGAGCAAGGTATATGGTTGCTGCTAATATCAATCTTTATTCTTCTTCACTTTCTGAGGTTGAGCAAGAGCAAGAGGAAGTTGCTATGAGCTTGATCATGCTTAGTAAGGATTTGAGGTCTTGGAGTGGTATCAATTCAGTTGATGATTTATCTGATTATAACTCTGCTTACTTCAAAACTTCATCTTCAGTTCAAACTAAAATTGAGAAAATGAAGAAGCCTATGCTGAATTGTTCTTCTGAGATTGCAAAAGTGATCAATCAAAGTGGGAAGAAGTTAGAGTTTGGGAGTTGTGTTTCTGAAAATCTCAACTCCAAAGGAAAAGGTTCTGAACCTTTGACTACTGAGCTCAAGAGTGAGAAAGCAAAGTTTGCATTGGAGGACTCTGAAGGTTACAGAGTCAATGGAACAGAATCAGTTTTATCCAAGTCTACTATTACTAACAAGTACAGGTCAATAAAGACAAAGTTTTTGGGTTCTGAATTGAAGTCAAATTCTGTTCAGAATTTGGCAGATAAGCCTTCAGAAGCAGGTGAATTCAGCAAGAACCCTCATAAAAGAGGCAAATTTGAGTGTACAACTTGCAACAAAATCTTCGATTCATACCAAGCACTTGGAGGTCATAGAGCTAGTCACAAAAGAAACAAAAGCTGCTTTGTTTCAAGGAATGAGAGAGGTGAAAACAGCATTGAAACTCAACTCTCTCCTGATCCAACAACTGAAAGCAAGCTCATGAAAAATAGTGTCAGGGACTATCTGGTTGAAGCTGAAGTGGATGCTGCTGGTTTTGGAAATGAAGTAGCAGACACGGTTACCGAGTCTAAGAAAATCAAAGTTCATAAGTGTCCAATTTGCTATAAGGTTTTTCAATCTGGGCAAGCTTTGGGTGGCCACAAGAGATCTCATTTAGCCAGTGGGTCTGACAGTGCAAAAAACTTTCAAAAAGTCGTACTTGAGGAACCGGTTCGAGAAATTAGGGAGTTCCTTGATCTCAATCTTCCTGCTGCTACAGAAGAGGAAAGTACTAGCTATGCTGATTCTAACAGACCATGGTAG | 1542 | 0.3975 | MEEVQELMKQQHACKFCSKSFPCGRSLGGHMRSHITNLSSSAETEDKEKVVGSEAGYGTTINTGYGLRENPKKTWRIADSTGEETSFTLAIERFCRECGKGFHSWKALFGHMKCHSDKQRVSNNLVEDQDSVTNNNAKMVLLDSQSDNEAVAPSKRRRSKRRRARYMVAANINLYSSSLSEVEQEQEEVAMSLIMLSKDLRSWSGINSVDDLSDYNSAYFKTSSSVQTKIEKMKKPMLNCSSEIAKVINQSGKKLEFGSCVSENLNSKGKGSEPLTTELKSEKAKFALEDSEGYRVNGTESVLSKSTITNKYRSIKTKFLGSELKSNSVQNLADKPSEAGEFSKNPHKRGKFECTTCNKIFDSYQALGGHRASHKRNKSCFVSRNERGENSIETQLSPDPTTESKLMKNSVRDYLVEAEVDAAGFGNEVADTVTESKKIKVHKCPICYKVFQSGQALGGHKRSHLASGSDSAKNFQKVVLEEPVREIREFLDLNLPAATEEESTSYADSNRPW* | 514 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan12g1233 | 513 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 352 | 379 | IPR013087 | - | |
| Lan12g1233 | 513 | Gene3D | Classic Zinc Finger | 349 | 464 | - | - | |
| Lan12g1233 | 513 | Gene3D | Classic Zinc Finger | 9 | 115 | - | - | |
| Lan12g1233 | 513 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 513 | - | - | |
| Lan12g1233 | 513 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 14 | 34 | IPR013087 | - | |
| Lan12g1233 | 513 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 93 | 120 | IPR013087 | - | |
| Lan12g1233 | 513 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 442 | 469 | IPR013087 | - | |
| Lan12g1233 | 513 | SUPERFAMILY | beta-beta-alpha zinc fingers | 10 | 36 | IPR036236 | - | |
| Lan12g1233 | 513 | SMART | c2h2final6 | 12 | 34 | IPR013087 | - | |
| Lan12g1233 | 513 | SMART | c2h2final6 | 93 | 115 | IPR013087 | - | |
| Lan12g1233 | 513 | SMART | c2h2final6 | 442 | 464 | IPR013087 | - | |
| Lan12g1233 | 513 | SMART | c2h2final6 | 352 | 374 | IPR013087 | - | |
| Lan12g1233 | 513 | Pfam | C2H2-type zinc finger | 12 | 34 | - | - | |
| Lan12g1233 | 513 | Pfam | C2H2-type zinc finger | 352 | 376 | - | - | |
| Lan12g1233 | 513 | Pfam | C2H2-type zinc finger | 95 | 117 | - | - | |
| Lan12g1233 | 513 | Pfam | C2H2-type zinc finger | 441 | 466 | - | - | |
| Lan12g1233 | 513 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 354 | 374 | IPR013087 | - | |
| Lan12g1233 | 513 | SUPERFAMILY | beta-beta-alpha zinc fingers | 94 | 374 | IPR036236 | - | |
| Lan12g1233 | 513 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 444 | 464 | IPR013087 | - | |
| Lan12g1233 | 513 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 513 | - | - | |
| Lan12g1233 | 513 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 95 | 115 | IPR013087 | - | |
| Lan12g1233 | 513 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 12 | 34 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan12g1233 | Lan-Chr12 | 18332417 | 18342957 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan12g1233 | 4 | 501 | C2H2 Transcription Factor Family | AT1G26610 | 32.448 | 7.94e-56 | 191 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Lan12g1233 | zf-C2H2_6 | 1.8e-12 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan12g1233 | - | - | lang:109344462 | 671.389 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan12g1233 | 12 | 18332417 | 18342957 | Lan1g1050 | 1 | 20732557 | 20734986 | LSH | |
| Lan12g1233 | 12 | 18332417 | 18342957 | Lan1g0117 | 1 | 870955 | 873347 | LSH |