Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1221 ATGGGAAGAGGGAGGGTTGAACTGAAGAGGATTGAGAACAAAATCAATAGGCAAGTCACATTTGCCAAGAGAAGAAATGGTTTACTCAAGAAGGCGTATGAACTTTCAGTCCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAATCGTGGAAAACTCTATGAGTTCAGCAGCACCTCCTGCATGATGAAAACACTGGAGAAGTACCAGAAGTACAGTTACAGTGCACTAGAGACCAACCGATCGATTAATGACACTCAGACCAACTATCAAGAATATGTTAGACTAAAAGCAAACGTCGAAGTGCTTCAACGTTCACAGAGGAACCTGCTCGGGGAAGATCTTGCCCAAATGAACACAAGTGAGCTGGAGCAGCTTGAGAATCAACTGGAGGCAGCACTGAGGAATATTAGGTCAACAAAGACTCAATTCATGCTTGGCCAGCTCGCTGATCTTCACAACCGGGAAACAGTGCTTGTTGAAACTAATAACGCGTTAAGGAGTAAGTTGGAAGAAACTAATAACTCACAAGTTCCAGCGGCACCATCATTGGAAGCTGGAGGGTCAAACATCCATTACACTCGATTTCCTCCTCATTCAGAAGGGTTTTTCCAGCCTCTGCGAGTTAACCCCAGCTTGCAAATTGGATATAGCACAACGGGTGCTGATGATGTAAACGTTGGTGCTTCATCCCTAAATATGCGTGGATTTGTCTCTGGGTGGATGCTTTGA 735 0.4476 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSCMMKTLEKYQKYSYSALETNRSINDTQTNYQEYVRLKANVEVLQRSQRNLLGEDLAQMNTSELEQLENQLEAALRNIRSTKTQFMLGQLADLHNRETVLVETNNALRSKLEETNNSQVPAAPSLEAGGSNIHYTRFPPHSEGFFQPLRVNPSLQIGYSTTGADDVNVGASSLNMRGFVSGWML* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1221 244 Coils Coil 117 144 - -
Lan12g1221 244 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lan12g1221 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lan12g1221 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan12g1221 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan12g1221 244 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan12g1221 244 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lan12g1221 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan12g1221 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan12g1221 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan12g1221 244 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 232 - -
Lan12g1221 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Lan12g1221 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan12g1221 244 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan12g1221 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1221 Lan-Chr12 18239112 18243506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1221 1 244 MADS-box Gene Family AT5G15800 53.817 2.31e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan12g1221 K-box 6.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1221 K09264 - gmx:100797819 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1221 12 18239112 18243506 Lan1g0138 1 1025709 1030407 LSH