Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1218 ATGGAGTTTCCTCAAGCGCGTGCCTTTGGAACTCAAGGAACGAAATCGACGCATGACTTTCTGTCACTCTACAGTAATTCAACTACCCAACAAGATTCAAGGCCACCTTCTCAAGCGTGCACAGGAAGTCGACTAAAGACCCATGATTTCTTGCAGCCACTAGAACGAGCAGAAACAAAAGCCACTGCCAAGGAAGAAGCCACAGATGAAATATCATCGGTAGCTCCTAAGCCACCTCCTCCACCACCACCTTCTGTTGAGCACCTCTTACCCGGAGGAATTGGGACTTACAGTATTAGCCACATTTCCTATTCTAATAATAATACTCAAAGGGTTCCGAAGCCAGAGACATCCCTTTTCACTGTGCATCAAGCCACTAGTACGGATAGAAATGATGAAAACTCCAACTGCAGTTCATATACTTCAAGTGGGTTCACTTTGTGGGACGAGTCTGCTGTTAAGAAGGGAAAGACAGGGAAGGAGAATAATGTTGCAGGCAAACCCATCATAGGAGTGACAGAGTCTGCTGCGAAGCCAGGGCAGTGGACGTTGAGTGAGCGAACGTCACAGTCGTTTTCTAACAATCGCCACAACAGCTTCAACTCTCGCTCCTTCTCTCAGACAACTGGGCAGAAGAACCAGAGTTTTATAGAAATGATGAAGTCCGCAAAGGACGGTGCCCAGGATGAAGAGATAGAAAATGAAGAAGCATTTTTTCTTAAGAAAGAATCCCAAAGAGCAGAACTGAAAGTGAAAGTGGATGGGAAGAGTACTGAACAAAAGCCAAACACACCAAGATCTAAACATTCTGCAACTGAGCAGCGGAGAAGAAGCAAAATTAATGACAGATTCCATATGCTACGAGAGCTTATCCCGCACGGTGACCAAAAGAGGGACAAAGCATCCTTTCTGTTAGAGGTTATCGAGTATATTCACTTTTTACAAGAGAAGGTGCAAAAGTATGAAGGTTCATTCCAAGGGTGGAGTCATGAGCCAGAAAAGTTGACGCCATGGAGAAATAATGACAAGCCAGCAGAAAGCTTTGAACATCGTGGTGCAAATAGTGGATCAGGTCCATCTACATCATTGCTGTTTGCTAGAAAGACAGATGAGAAAAATATCACCATTTCCCAGAAAACTCCTGGAAGTATTCAGAATGTGGAATCTGGCTTGGACACAGCAACTAACTTCAAGACAATGGATCATCATCCTGGCATATCGAACAAGGCTTTTCCGGTTCCTATTTCTCCACACCCAAATTTCTTCACTCCAACCCAGAGTGGAGGTCAAGGTGGAGTGATGTCTCAGCTCGCACATAGATTGGCATTTGATGTAGAGAACGCTATATATCAACCTTCCGATGAGTGTGAGACTTTGACAGCTACAAGTGAAAAACTGAAAGATAAAGAGCTCACCATTGAAGGTGGTGCCATTAACATATCAAGTGTGTACTCAAAAGGATTGTTGGATACACTTACGCATGCACTTCAAAGTTCAGGAGTGGATTTGTCACAAGCTAGCATCTCAGTGCAAATTGAACTTGGGAAGCAAGCAAACATCAGACCAACTTTACCAATGTCTACGTGTGCTGCTAAGGATGATGAAGTTCCTTCTAACAATCAGAGGATGATGCGATCTAGAGTTGCTAGCTCTGAGAAGTCTGACCAAGCATTAAAGAAGCTAAAGACGTGCAGAACCTAA 1701 0.4397 MEFPQARAFGTQGTKSTHDFLSLYSNSTTQQDSRPPSQACTGSRLKTHDFLQPLERAETKATAKEEATDEISSVAPKPPPPPPPSVEHLLPGGIGTYSISHISYSNNNTQRVPKPETSLFTVHQATSTDRNDENSNCSSYTSSGFTLWDESAVKKGKTGKENNVAGKPIIGVTESAAKPGQWTLSERTSQSFSNNRHNSFNSRSFSQTTGQKNQSFIEMMKSAKDGAQDEEIENEEAFFLKKESQRAELKVKVDGKSTEQKPNTPRSKHSATEQRRRSKINDRFHMLRELIPHGDQKRDKASFLLEVIEYIHFLQEKVQKYEGSFQGWSHEPEKLTPWRNNDKPAESFEHRGANSGSGPSTSLLFARKTDEKNITISQKTPGSIQNVESGLDTATNFKTMDHHPGISNKAFPVPISPHPNFFTPTQSGGQGGVMSQLAHRLAFDVENAIYQPSDECETLTATSEKLKDKELTIEGGAINISSVYSKGLLDTLTHALQSSGVDLSQASISVQIELGKQANIRPTLPMSTCAAKDDEVPSNNQRMMRSRVASSEKSDQALKKLKTCRT* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1218 566 MobiDBLite consensus disorder prediction 249 280 - -
Lan12g1218 566 MobiDBLite consensus disorder prediction 9 45 - -
Lan12g1218 566 MobiDBLite consensus disorder prediction 335 349 - -
Lan12g1218 566 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 335 IPR036638 GO:0046983
Lan12g1218 566 MobiDBLite consensus disorder prediction 545 566 - -
Lan12g1218 566 MobiDBLite consensus disorder prediction 188 210 - -
Lan12g1218 566 SMART finulus 270 320 IPR011598 GO:0046983
Lan12g1218 566 MobiDBLite consensus disorder prediction 49 71 - -
Lan12g1218 566 MobiDBLite consensus disorder prediction 548 566 - -
Lan12g1218 566 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 314 IPR011598 GO:0046983
Lan12g1218 566 Pfam Helix-loop-helix DNA-binding domain 266 315 IPR011598 GO:0046983
Lan12g1218 566 PANTHER TRANSCRIPTION FACTOR BIM1 1 563 - -
Lan12g1218 566 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 563 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lan12g1218 566 MobiDBLite consensus disorder prediction 332 361 - -
Lan12g1218 566 MobiDBLite consensus disorder prediction 74 88 - -
Lan12g1218 566 CDD bHLH_AtBIM_like 263 339 - -
Lan12g1218 566 MobiDBLite consensus disorder prediction 1 93 - -
Lan12g1218 566 Gene3D - 262 335 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1218 Lan-Chr12 18218168 18225534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1218 1 563 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 43.655 5.20e-118 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan12g1218 HLH 3.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1218 - - gmx:100808016 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1218 12 18218168 18225534 Lan1g1077 1 20915302 20925526 LSH
Lan12g1218 12 18218168 18225534 Lan1g0149 1 1107743 1112227 LSH