Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1217 ATGGCATATGTTACCACCTTTCTCCGCAACCACGAACCCGACGAAGATTTCGATTTCGATTCCAATACCTTTCCCTACTTTTCCCACTCTTCCCCTGATTTCAATTTCGATTTCTATTCTTCCGAACCCGAATTCCCACCCGCTCCTGAACCCGGTTCACCTTCCCTCTTCGACCGAAACAACCAGGTTCATTTCGTAATGGATCTCTTTCAACAACGCGTTGAACAATCTCAGGTCACGGGTCTTGAATATTTCGTTACTGAACCCCAAAACGACGCCGCTTTTGCCGTTATCGATGGATACTCTGACCTGGGCATCGACATGGACGATAATTTGGGGATCGATTTAGGGTTTTGTCCCGAGAGGGATATGTTTTCTAGTTCTGAATCAAATGAGGCACCTTTTCGTAATTGTGTTCACGTTATAGGGTTTGGGTCGGATTCTGATGAGGAAGAAGAAGAGAACGAGGTTTTGGAGAATTGTGTGCATTCTGATGAAGACTATAACGATGTAAACGACGACGTTTCAATTATTCCTCTACGTTGGGATTCACTTCAGTTGGAAGAGGATAACAAGGACAGAAACGATGATTTTGAGTGGGAGGAAGTGGATGTGGATGGTAGAGTTGATGAGAGAGATGTTTTGAGCATGCTCGCCATTGATGATGAGAGATCGGTTTCGGTTTCAGTGACTCCGGTGATAGAAGAAGAAGAAGAAGAAGTGAGTGTTGTGAGGGTGGGTGGTATGGAGAATTTGGAGTGGGAAGTGTTGTTGAATGCAAATAATTTGGATACAATAAGAACTCCTGATATGGATCATGATGATGATTTAGAAGAGCCTTATTTTAGTGATCATGATGATTATATTTACACTGCTGAGTATGAAATGATGTTTGGTCAATTTGCTGAGAATGAAAACGCTTTAAGGCCTCCGGCTTCTGTATCTTTTGTTCGGTACCTGCCATCAGTGGCTGTGACCAAGGAAGATGTGGATAACAACAATGCACTTTGTGCTGTTTGCAAAGAGGACTTTGCTGAAGGGGATCAAGCTAAGCAATTGCCGTGTTCCCATCGATACCATGGTGATTGCATTGTACCTTGGTTGGCCATTCGAAACACTTGCCCTGTTTGCCGCTTTGAGTTTCCAACTGATGATGCTGATTATGAGCGTAGGAGGGCCGATAGATCTGTCCTGAATCTTTGA 1203 0.4381 MAYVTTFLRNHEPDEDFDFDSNTFPYFSHSSPDFNFDFYSSEPEFPPAPEPGSPSLFDRNNQVHFVMDLFQQRVEQSQVTGLEYFVTEPQNDAAFAVIDGYSDLGIDMDDNLGIDLGFCPERDMFSSSESNEAPFRNCVHVIGFGSDSDEEEEENEVLENCVHSDEDYNDVNDDVSIIPLRWDSLQLEEDNKDRNDDFEWEEVDVDGRVDERDVLSMLAIDDERSVSVSVTPVIEEEEEEVSVVRVGGMENLEWEVLLNANNLDTIRTPDMDHDDDLEEPYFSDHDDYIYTAEYEMMFGQFAENENALRPPASVSFVRYLPSVAVTKEDVDNNNALCAVCKEDFAEGDQAKQLPCSHRYHGDCIVPWLAIRNTCPVCRFEFPTDDADYERRRADRSVLNL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1217 400 PANTHER - 57 395 - -
Lan12g1217 400 Pfam Ring finger domain 337 378 IPR001841 -
Lan12g1217 400 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 57 395 - -
Lan12g1217 400 SUPERFAMILY RING/U-box 321 384 - -
Lan12g1217 400 SMART ring_2 337 377 IPR001841 -
Lan12g1217 400 CDD RING-H2_RNF126_like 337 378 - -
Lan12g1217 400 ProSiteProfiles Zinc finger RING-type profile. 337 378 IPR001841 -
Lan12g1217 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 384 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1217 Lan-Chr12 18207742 18209223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1217 178 384 C3H Transcription Factor Family AT5G60820 48.198 4.59e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1217 - - adu:107469048 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1217 12 18207742 18209223 Lan1g0150 1 1120898 1122395 LSH