Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1216 ATGGGTTGTTCATTTTCTGGTTTAAATGCATTATACGACACCGTTAACGGAGGAGTTGACGTGTGGATTAACGACAACCGTTTCCGTGTGGTGAGCCAACTCGGTGAAGGTGGCTTCGCTTATGTCTTCCTCGTCAAAGAGATCCTCTCCGATTCAGTTTCCAATCTCAAACACTCCTCTCTTCTCTCCGATGATGGAACTTATGCTATGAAAAAGGTCCTCATTCAGAACAATGAACAGTTGGAGTTGGTCAGGGAGGAGATTCGTGTTTCATCACTGTTCAATCACCCAAATCTGCTCCCCCTTCTTGATCATGCAATCATTTCTGTTAAGCCTACCCAAGAAAAATCTTGGACCAATGAGGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTGCTTGACAATGCCAAAACAATGAAAGCCAAGAAGGAGTTCTATTCTACCTCAGATGTTCTTCAAATATTTCACCAGCTTTGTGCCGGACTCAAGCATATGCACAATCTAGATCCTCCATATGCTCATAATGATGTCAAACCGGGCAATGTTCTCATAACACAGAGAAAAGGACAACCACCTCTTGCTATACTGATGGATTTTGGCAGTGCTCAACCTGCCAGGAAGCAAATTAGATCCAGACAGGACGCACTCCAGTTGCAGGAATGGGCATCTGAGCATTGTTCTGCTCCTTTCCGAGCTCCTGAGCTTTGGGATTGCCCAAGCCATGCTGATATAGATGAGAGGACTGACGTTTGGTCGCTAGGATGTACATTGTATGCAATAATGTATGGGGTATCACCCTTTGAATATGCACTTGGAGAATCTGGTGGAAGCCTGCAATTGGCTATCGTAAATGCTCAGATAAAATGGCCAGCTGGACCTAAGCCCTCATATCCAGATGCTCTTCATCAGTTTGTCTCATGGATGCTTCAGCCACAAGCTGCTGTGCGGCCCCGTATAGACGATATCGTTATCCATGTGGATAAGTTGATTGCAAAGTTCTCTCAGTGA 1014 0.4467 MGCSFSGLNALYDTVNGGVDVWINDNRFRVVSQLGEGGFAYVFLVKEILSDSVSNLKHSSLLSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLDHAIISVKPTQEKSWTNEAYLLFPVHLDGTLLDNAKTMKAKKEFYSTSDVLQIFHQLCAGLKHMHNLDPPYAHNDVKPGNVLITQRKGQPPLAILMDFGSAQPARKQIRSRQDALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDVWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQIKWPAGPKPSYPDALHQFVSWMLQPQAAVRPRIDDIVIHVDKLIAKFSQ* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1216 337 Gene3D Transferase(Phosphotransferase) domain 1 15 336 - -
Lan12g1216 337 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 336 - -
Lan12g1216 337 PANTHER - 1 336 - -
Lan12g1216 337 SUPERFAMILY Protein kinase-like (PK-like) 19 327 IPR011009 -
Lan12g1216 337 Pfam Protein kinase domain 30 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1216 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Lan12g1216 337 SMART serkin_6 28 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1216 337 ProSiteProfiles Protein kinase domain profile. 28 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1216 337 CDD STKc_16 27 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1216 Lan-Chr12 18200791 18204898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1216 33 327 EF-hand Containing Proteins AT4G04710 24.752 2.04e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Lan12g1216 Pkinase 6.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1216 K08856 - gmx:100803659 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1216 12 18200791 18204898 Lan1g1082 1 20952671 20956396 LSH
Lan12g1216 12 18200791 18204898 Lan1g0152 1 1126868 1131013 LSH