Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1200 ATGAGCTGGCGCAGAGTTTTGAAATCGGCACAGGCTCTTGCTGCTCACACCTTTCTCTTTTGCTTCACTCTCTTCCTTGTTCTTAAGCTCGATCACTATGTTTTCTGCTCTTGGTGGTTAATATTTTTACCTCTTTGGATGTTTCATGCCGTTGTAGCTCGAGGAAGGTTTTCATTACCAGCGCCATCGGCTCCACGTAATCGACATTGGGCACCGTGCCACGCTGTAGTTGCAACGCCATTGATTATTGCATTTGAATCGCTCCTTTGTATATATCTCGAGAGCTTATATGTTGATGGTTATGCAGCAGTCAGTCTGAAGCTTGTGTTCCTTCCCTTACTATTATTTGAAATCCTTATTCTCATTGACAATTTCAGAATGTGCAAGGCTCTCATGCCAGGGGATGAAGGAAACATGAGTGACGAGGCAATATGGGAAACTCTTCCTCACTTTTGGGTCGCAATCTCTATGGTCTTCTTCATTGCTGCTACAGTCTTCACACTCCTAAAACTGAGTGGTGATGTTGCTTTGGGATGGTGGGACTTGTTTATTAACTTTGCTATTGCCCAGTGCTTTGCTTTTCTTGTATGTACGAAGTGGTCTAATCCAGTCATTCATAGAAATTCTAGAGAACCCAGTTCATCTTCTACTACGATTAGATATCTTGACTGGAACAGTGGTTTAATGGTTTCTTCCGAGGAAAGTGAACGTCAGAACAGAGTGTGCAGCCTGCAAGACATAGGAGGCCATTTCATGAAAGTGCCAGTTATTGTATTCCAGATTCTTCTTTGTATGTATCTAGAGGGAACACCTGCTTCTGCTGTATATATACCTCTTCCGGCTCTTTTCTCTCCTATTTTCATACTACAAGGCGCTGGTGTATTGTTATCTGTCTCTAAGTTGGTGGAGAAACTTGTACTACTATTACGTAGTGGAGCTGGTAGAGGAATGTATTTTAGATTTTCTTCAAGAGTTCATGATTGCTTGGGGTTCTTGCACCATGGTTCTAGGTTATTAGGTTGGTGGTCAATTGATGAAGGAAGTCGGGAAGAACAGGCATGCTTGTACCAAGAGGGAGCATCTGGGTATAATACATTCTCTGGTTATCCTCCTGAGATTGTCAAGAAAATGCCTAAAAAGGATCTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAGCAGGCGGAAATTACGAAATACAGTCAACAGGCATATGAAAGGCTTCAAAATGAGAAAGTGTTATGCAGAGTTTGTTTTGAGGGAGAAATTAGTGTTGTATTGCTGCCATGTAGGCATCACGTCCTTTGCAGTGCTTGCTCGGAAAAGTGTAATAGGTGCCCAATTTGCCGCGTCTCCATCGCAGAGCGTTTGCTTGTATATGATGTTTAG 1395 0.4301 MSWRRVLKSAQALAAHTFLFCFTLFLVLKLDHYVFCSWWLIFLPLWMFHAVVARGRFSLPAPSAPRNRHWAPCHAVVATPLIIAFESLLCIYLESLYVDGYAAVSLKLVFLPLLLFEILILIDNFRMCKALMPGDEGNMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVALGWWDLFINFAIAQCFAFLVCTKWSNPVIHRNSREPSSSSTTIRYLDWNSGLMVSSEESERQNRVCSLQDIGGHFMKVPVIVFQILLCMYLEGTPASAVYIPLPALFSPIFILQGAGVLLSVSKLVEKLVLLLRSGAGRGMYFRFSSRVHDCLGFLHHGSRLLGWWSIDEGSREEQACLYQEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQAEITKYSQQAYERLQNEKVLCRVCFEGEISVVLLPCRHHVLCSACSEKCNRCPICRVSIAERLLVYDV* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1200 464 Pfam Zinc finger, C3HC4 type (RING finger) 414 456 - -
Lan12g1200 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 462 IPR013083 -
Lan12g1200 464 ProSiteProfiles Zinc finger RING-type profile. 417 452 IPR001841 -
Lan12g1200 464 SUPERFAMILY RING/U-box 408 457 - -
Lan12g1200 464 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 464 - -
Lan12g1200 464 Pfam Transmembrane Fragile-X-F protein 28 289 IPR019396 -
Lan12g1200 464 SMART ring_2 417 451 IPR001841 -
Lan12g1200 464 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1200 Lan-Chr12 18128219 18154640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1200 1 464 C3H Transcription Factor Family AT1G73950 70.753 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1200 - - gmx:100791390 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1200 12 18128219 18154640 Lan1g1094 1 21059000 21065785 LSH