Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1190 ATGGGAGGTGTCAGGTTATGGGATGTAAGGAGTGGCAAAATAGTCCAGACACTGGAGACCAAGTTACCTGTGACAAGTGCTGAAGTGAGTCAGGATGGACATTATATTACAACAGTTGATGGTTCCACTGTCAAGTTTTGGGATGCAAATCACTATGGATTGGTTAAGAGCTATGATATGCCCTGCACCATGGAATCAGCTTCATTGGAGCCGAAGTACAGGAACAAGTTCATTGCTGCGGGAGAAGACATGTGGATTCATGTTTTTGATTTCCATACAGGCAATGAGATTGCATGCAACAAGGGCCACCATGGTCCTGTCCACTGTGTCCGTTTCTCTCCTGGAGGAGAATCATATGCCTCGGGATCTGAGGATGGGACCATCAGAATATGGCAGACACCGTTGTCTCATGATGCAGCATCGGAGGCCTTATCTGCAAATGAATCAATTGAAAAGGGGATGAAGATAAGTGCAGACGAGGTTTCACACAAAATCGAGAGTTTCCATATTGCAGATGAGGGGAAATCCAAAGAGAGTGAACAGGCTGGGGAGTAA 555 0.4595 MGGVRLWDVRSGKIVQTLETKLPVTSAEVSQDGHYITTVDGSTVKFWDANHYGLVKSYDMPCTMESASLEPKYRNKFIAAGEDMWIHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTPLSHDAASEALSANESIEKGMKISADEVSHKIESFHIADEGKSKESEQAGE* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1190 184 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 132 IPR001680 GO:0005515
Lan12g1190 184 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 2 136 IPR011047 -
Lan12g1190 184 Pfam WD domain, G-beta repeat 98 131 IPR001680 GO:0005515
Lan12g1190 184 SMART WD40_4 11 48 IPR001680 GO:0005515
Lan12g1190 184 SMART WD40_4 93 132 IPR001680 GO:0005515
Lan12g1190 184 Gene3D - 2 40 IPR015943 GO:0005515
Lan12g1190 184 Gene3D - 41 160 IPR015943 GO:0005515
Lan12g1190 184 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 100 132 - -
Lan12g1190 184 PANTHER OS02G0205400 PROTEIN 1 180 - -
Lan12g1190 184 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1190 Lan-Chr12 18052489 18053547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1190 4 130 Eukaryotic Initiation Factors Gene Family AT2G46290 26.897 9.95e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1190 K13137 - gmx:100782712 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1190 12 18052489 18053547 Lan1g1104 1 21137855 21141517 LSH
Lan12g1190 12 18052489 18053547 Lan1g0199 1 1456378 1459998 LSH