Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1181 ATGAGTTTTTTCAATGATTTGCCACCCTATATTCCGTTACCGCCACCATATGATGCTACCTCACAGACCGATGCCATTGTTTTAAGTGTTGAACAAGAATTCCCAGAGAATGATGAACCATTCATCAAACGTTCACTAATTGATGATCATGATCATGATCATGATTATCCCCCTTCATTCAATAGAGCAAGAACAACTTCTTTTGAGATCAATAACAACAACCATTCCAATGCAATTCCATGCCCTCCAAGAATGGTCATGATGCATCCACAGAACAACAACAAAGTCGGAACCGGAACAAGCCACATTTTCTTCAAGACCCGAATGTGTGCAAAGTTTAGGCTTGGCTCTTGTAGGAATGGTGAGAACTGTACTTTTGCACATGGGGTTGAAGATATGAGGCAACCGCCGCCTAATTGGCAGGAAATTGTTGGCTTGCACGGCAGCAACGATGCTGCAGAGAATTGGGATGATGATCAGAAAATTATACATAAGATGAAGCTATGTAAGAAGTATTATAATGGGGGGGAATGTCCTTATGGTGAAAGGTGTAATTTCCTTCATGAGGACCCCGCGAAGTTTAGGGATGATTCGGGTCGGATTAAGGAGAGCTCAGCAATAAACATAGGGACTAATGGATCTCCAAAGTCCTACTTGAATGGCTATGATCATAATAATTCAGAAACTAATAAGGTCATGGCTCTGAGTATGGGTTTAAATGCTTACAGGGGAAATGTGAGATCCACTTTTTGGAAGACTAAGCTATGTATCAAATGGGAGACTACAGGTCACTGCCCTTTTGGGGAGGATTGTCACTTTGCTCATGGACAATCAGAGTTGCATGTTCTTGGTGGACGCATCGAAACAGAAGCTACAAGTGTCATTCCAATTGCAACTTATGCTACTAGTACAACCTTGCCAAAATTTACATCTATTCCTGTCATTGATGTTGCACCTGCTCCTAGCAACTTAGCAAGTCCACCTCGGGCAAATGACACTGCACAAGGAAAGAAGTGTTTATTGAAGTGGAAAGGAACTAAGAAGATCAATCGAATTTATGGTGATTGGCTTGAGGACGATGATGAGCCACATGTGTAA 1098 0.418 MSFFNDLPPYIPLPPPYDATSQTDAIVLSVEQEFPENDEPFIKRSLIDDHDHDHDYPPSFNRARTTSFEINNNNHSNAIPCPPRMVMMHPQNNNKVGTGTSHIFFKTRMCAKFRLGSCRNGENCTFAHGVEDMRQPPPNWQEIVGLHGSNDAAENWDDDQKIIHKMKLCKKYYNGGECPYGERCNFLHEDPAKFRDDSGRIKESSAINIGTNGSPKSYLNGYDHNNSETNKVMALSMGLNAYRGNVRSTFWKTKLCIKWETTGHCPFGEDCHFAHGQSELHVLGGRIETEATSVIPIATYATSTTLPKFTSIPVIDVAPAPSNLASPPRANDTAQGKKCLLKWKGTKKINRIYGDWLEDDDEPHV* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1181 365 Pfam CCCH-type zinc finger 108 129 IPR041367 -
Lan12g1181 365 SUPERFAMILY CCCH zinc finger 248 281 IPR036855 GO:0046872
Lan12g1181 365 Gene3D - 244 282 - -
Lan12g1181 365 Gene3D - 160 192 - -
Lan12g1181 365 Gene3D - 98 135 - -
Lan12g1181 365 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
Lan12g1181 365 SUPERFAMILY CCCH zinc finger 163 190 IPR036855 GO:0046872
Lan12g1181 365 SUPERFAMILY CCCH zinc finger 102 135 IPR036855 GO:0046872
Lan12g1181 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 165 188 IPR000571 GO:0046872
Lan12g1181 365 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 251 277 IPR000571 GO:0046872
Lan12g1181 365 ProSiteProfiles Zinc finger C3H1-type profile. 104 131 IPR000571 GO:0046872
Lan12g1181 365 ProSiteProfiles Zinc finger C3H1-type profile. 250 278 IPR000571 GO:0046872
Lan12g1181 365 SMART c3hfinal6 250 277 IPR000571 GO:0046872
Lan12g1181 365 SMART c3hfinal6 163 190 IPR000571 GO:0046872
Lan12g1181 365 SMART c3hfinal6 104 130 IPR000571 GO:0046872
Lan12g1181 365 PANTHER CCCH ZINC FINGER/TIS11-RELATED 51 359 IPR045877 GO:0003729
Lan12g1181 365 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 51 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1181 Lan-Chr12 18002691 18005005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1181 250 295 C3H Transcription Factor Family AT1G68200 43.750 1.29e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan12g1181 zf-CCCH 1.4e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1181 - - lang:109345375 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1181 12 18002691 18005005 Lan1g1111 1 21197313 21200132 LSH
Lan12g1181 12 18002691 18005005 Lan1g0215 1 1558910 1564084 LSH