Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan12g1178 | ATGGATGAAGATTTGATCAAGCGTAACACTGATTGCGTTTATTTCTTAGCCTCTCCCCTCACCTGCAAGAAGGGGGTTGAATGTGAGTATCGACATAATGAGGTTGCGAGGCTTAACCCAAGGGATTGTTGGTACTGGTTATCTGGTACTTGCTTTAATCCAACATGTGCTTTTAGACATCCTCCATTGGATGGGCATACTGGAACTCCATCTGAACCTACACAATCTCCCTTACCCACAAACAAAACAGCAGTTCCCTGTTATTACTTCTTCAATGGATTTTGCATAAAAGGTGACAGATGCTCATTTTTGCACACGCCTGATGATAGCTTCTATACTGTAAAACCTATGAAGAATGACAATGGAAGCACTGATGCACTCATCCTAGAAAATAAAACGTCATCGGCAAATAAAACAGGTGAAGCGTCAACTCCAACTGAATCACATTCTGACCCAGCTTTAACTGCCTTGTCTCGCTTTAAAGTTCAGCATAAGGAAGATCTTCTTCGGCTATCATTACCCAAAAATGTTAAACCGCAAGATGATTGCCTAGGGATATCTTCTTTCGAGTATAAAGAAGCTACAGTGACTAGGCCAGACTCTCTATCTCGAGGTGAAGGCTTTGTTCATAGCATATCTCATTTTTGCTCTGAGCAGAGTTCAGATGAGCAAGTAAATTGTCAAAGAGAACCTGAGGAACGGTGGGAATCGTCCCCTGGATTTGATGTTCTTGTTCATGATGGATTGGAGAACTTGGGTTATGAGGATGATTCTGAATATTTACCAGTCCTTGATAGGGAGCACCAGGAACTGGATGAACAATACTTGGGGTATGAATTTAAAAGCCCAGATGAATGTGATACTATATGTCCAGGAGCTGACATTCTGTATGGGCAAGAAATGTACGATGGTTACAGATGCTTAGATAGAGATCTTATACATGTTGATGGCAGAAAAGTTTGCGCTTATTCCAGAGAGATATTCTTGGATTCTATATTGTCCAGGAAACGGATTCGTATGCTTCCCGACAGGGCTAATTGTGGCAGGGACTTGGATCTTAGGGATCATCTGAGGAGACGTAAGGAAATTAATGTTCCTCCTGCTACAGGTTTCTTAAGAAGATATGAATCGTCGTTCGTGGTTCGAAGCCAGGAAAGGCAGCAAGGGTATGGCATTGATCAGCGGCCAAGTAGAAGATTGACATCACAGTTGGGATTCAGAACTGTGGAATCAATTGGAGAGGTTGAAACTCTTTTGGCTGTGAACAGGCGCAGGTTATTTAAGCATTCCAAGCAGCAACATAGGCCAAGGGAGCATTATAGAGAAAAACTAGCTAAACAGCATTTTCTTTCATCCAGGAAACCAGTTTTAAAACAAAGGAATTCTATCCATGAGTCCACTACATTTTCAGGACCCAAGACTCTTGCAGAAATTAAAGAAGAGAAGAAAAAGAAGACAGAAGAAAGTTTGCATTGTAGGAGCACGTCGGCTGATTTCAAGGACCCCAAACCTCTGAGTGAAATTCTCAAGGACAAAAGGAGCATAGATCAAGTGAGAGATGGGAATACTTACAACAATTGA | 1581 | 0.4175 | MDEDLIKRNTDCVYFLASPLTCKKGVECEYRHNEVARLNPRDCWYWLSGTCFNPTCAFRHPPLDGHTGTPSEPTQSPLPTNKTAVPCYYFFNGFCIKGDRCSFLHTPDDSFYTVKPMKNDNGSTDALILENKTSSANKTGEASTPTESHSDPALTALSRFKVQHKEDLLRLSLPKNVKPQDDCLGISSFEYKEATVTRPDSLSRGEGFVHSISHFCSEQSSDEQVNCQREPEERWESSPGFDVLVHDGLENLGYEDDSEYLPVLDREHQELDEQYLGYEFKSPDECDTICPGADILYGQEMYDGYRCLDRDLIHVDGRKVCAYSREIFLDSILSRKRIRMLPDRANCGRDLDLRDHLRRRKEINVPPATGFLRRYESSFVVRSQERQQGYGIDQRPSRRLTSQLGFRTVESIGEVETLLAVNRRRLFKHSKQQHRPREHYREKLAKQHFLSSRKPVLKQRNSIHESTTFSGPKTLAEIKEEKKKKTEESLHCRSTSADFKDPKPLSEILKDKRSIDQVRDGNTYNN* | 527 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan12g1178 | 526 | MobiDBLite | consensus disorder prediction | 480 | 518 | - | - | |
| Lan12g1178 | 526 | PANTHER | ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING | 1 | 515 | - | - | |
| Lan12g1178 | 526 | Pfam | Zinc-finger containing family | 7 | 63 | IPR041686 | - | |
| Lan12g1178 | 526 | Gene3D | - | 3 | 63 | - | - | |
| Lan12g1178 | 526 | Gene3D | - | 74 | 144 | - | - | |
| Lan12g1178 | 526 | ProSiteProfiles | Zinc finger C3H1-type profile. | 81 | 108 | IPR000571 | GO:0046872 | |
| Lan12g1178 | 526 | ProSiteProfiles | Zinc finger C3H1-type profile. | 6 | 35 | IPR000571 | GO:0046872 | |
| Lan12g1178 | 526 | MobiDBLite | consensus disorder prediction | 480 | 526 | - | - | |
| Lan12g1178 | 526 | SMART | c3hfinal6 | 39 | 62 | IPR000571 | GO:0046872 | |
| Lan12g1178 | 526 | SMART | c3hfinal6 | 82 | 107 | IPR000571 | GO:0046872 | |
| Lan12g1178 | 526 | SMART | c3hfinal6 | 7 | 34 | IPR000571 | GO:0046872 | |
| Lan12g1178 | 526 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 85 | 106 | IPR000571 | GO:0046872 | |
| Lan12g1178 | 526 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE | 1 | 515 | - | - | |
| Lan12g1178 | 526 | ProSiteProfiles | Zinc finger C3H1-type profile. | 37 | 63 | IPR000571 | GO:0046872 | |
| Lan12g1178 | 526 | SUPERFAMILY | CCCH zinc finger | 81 | 106 | IPR036855 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan12g1178 | Lan-Chr12 | 17988763 | 17991798 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Lan12g1178 | zf-CCCH_3 | 2.7e-11 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan12g1178 | - | - | aprc:113847503 | 733.406 |