Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1172 ATGTCTCAACCCCGTTACGTTCCTCCACACCGTGGTAACGGTTCCGTTGCTAGGCCACGTGGCAGAGGTAATGGTGGTTTTGGTGGTCGTTGGTTCCCGGACCAAGTATCTTCGTCGTTCCGGAATGATATCTCTGACATTTCGGAAAAGTTTGACGAGCTTGAAGTGATCGGAGAAGGTGAAAACTCCGGCGTGATAAACTTCGACGCATATGAATCGGTGCCGGTGGAGGTGAGCGGGAATAACGTACCTCCACCGGTGAATAACAGCTTCGGTGAAACGGAGTTGGAGGAAGGGTTGAAGAGGAATATAGAGAGATGCAAGTACGTGAAACCTACTCCCATTCAGCGTCACGCTATTCCTATTGCTTCTGCAGGTCGTGACTTAATGGCTTGTGCTCAAACTGGTTCTGGTAAAACGGCAGCGTTTTGTTTTCCTATTATTTCTGGGATTTTGAGTCTCAAGGCTCGTTCTCCTTCAGGGCTTTATTCAATGTCTCGTGGTGGTGGTGGTGGTTCTGTTGCATACCCCACTGCGCTTATTTTGGCTCCTACTAGGGAATTGTCCTCTCAGATTCATGATGAAGCCAAGAAATTTGCTTATCAAACTGGGTTGAAGGTTGTCGTTTGTTATGGTGGGGCCCCCGTTAGTCACCAGCTACGCAATTTAGAGCGTGGTGTTGATATATTGGTTGCAACTCCTGGGAGGTTGGTGGATTTCATTGAGAGAGAAAGGGTTTCACTTTCAAAGATCAAGTATCTTGCACTAGATGAAGCTGACCGTATGTTGGACATGGGATTTGAACGTCAAATACGCAAGATTGTTCAGCAAATGAATATGCCTCCACCTGGTTCAAGACAGACATTGCTTTTCAGTGCTACATTCCCCACTGATATACAGAAGCTTGCGTCTGATTTTCTATCAGATTACATATTTCTGTCTGTTGGAAGGGTTGGTTCAAGCACTGAACTCATTCAACAGAAAGTTGAACTTGTTGAGGATGCAGACAAAAGAAATTATCTTATGAATCTTCTTCATTCTCAAAGGGCGAGGGGACTCAATGGGAAGAAACCACTGACCCTTGTATTTGTTGAAACGAAGCGGGGTGCTGACAATTTGCAATTCTGGCTTTCTAGAAATGGGTTTGCAGCTACTGCAATACACGGTGACAAAGTTCAAATGGAGAGGGAAAGAGCTCTCAGATCTTTCAAAAATGGTGATACTCCTGTTTTGGTTGCAACTGATGTTGCTTCCCGAGGATTGGATATCCCACATGTGGCTCATGTTATCAACTTTGATTTGCCTAAAGACATAGATGACTATGTACATAGGATTGGCAGAACAGGGCGTGCTGGTAAATCTGGTTTAGCCACTGCCTTCTTCAGCCACCAGAATGTTCCTATTGCGAAAGCGCTTGTTGCACTCTTGCAAGAAGCAAAACAAGAAGTTCCTGCTTGGCTCAGTGACTACAGTCAATCTTCATCACAAAGTGATCACAGCCATCGATCTCAGCGGTATGGTGGTGGTAAGTATGGTGGCCGAGACTTCCGAAATTTCACGGAACCTAATGGCAATGGATATCATGCCATGGAAACTTATAATACTGCTACATCTCATGACATCCCAAATGCAGCATTTGGTGGCAGCTATCATTACATTGGTGGTAATACTGATTTGTATAGAGGTGGTGAGGTTGAAGGTGGGCCATTGGGTTATGCAACCGTTGTTCCCTCTGGCTGGGACTAA 1746 0.4536 MSQPRYVPPHRGNGSVARPRGRGNGGFGGRWFPDQVSSSFRNDISDISEKFDELEVIGEGENSGVINFDAYESVPVEVSGNNVPPPVNNSFGETELEEGLKRNIERCKYVKPTPIQRHAIPIASAGRDLMACAQTGSGKTAAFCFPIISGILSLKARSPSGLYSMSRGGGGGSVAYPTALILAPTRELSSQIHDEAKKFAYQTGLKVVVCYGGAPVSHQLRNLERGVDILVATPGRLVDFIERERVSLSKIKYLALDEADRMLDMGFERQIRKIVQQMNMPPPGSRQTLLFSATFPTDIQKLASDFLSDYIFLSVGRVGSSTELIQQKVELVEDADKRNYLMNLLHSQRARGLNGKKPLTLVFVETKRGADNLQFWLSRNGFAATAIHGDKVQMERERALRSFKNGDTPVLVATDVASRGLDIPHVAHVINFDLPKDIDDYVHRIGRTGRAGKSGLATAFFSHQNVPIAKALVALLQEAKQEVPAWLSDYSQSSSQSDHSHRSQRYGGGKYGGRDFRNFTEPNGNGYHAMETYNTATSHDIPNAAFGGSYHYIGGNTDLYRGGEVEGGPLGYATVVPSGWD* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1172 581 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 313 IPR014001 -
Lan12g1172 581 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 22 528 - -
Lan12g1172 581 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 117 IPR014014 GO:0003724
Lan12g1172 581 Gene3D - 315 495 IPR027417 -
Lan12g1172 581 CDD SF2_C_DEAD 325 461 - -
Lan12g1172 581 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 528 - -
Lan12g1172 581 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 491 IPR001650 -
Lan12g1172 581 SMART ultradead3 108 328 IPR014001 -
Lan12g1172 581 MobiDBLite consensus disorder prediction 490 517 - -
Lan12g1172 581 Pfam Helicase conserved C-terminal domain 337 452 IPR001650 -
Lan12g1172 581 Gene3D - 46 314 IPR027417 -
Lan12g1172 581 MobiDBLite consensus disorder prediction 1 32 - -
Lan12g1172 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 469 IPR027417 -
Lan12g1172 581 SMART helicmild6 371 452 IPR001650 -
Lan12g1172 581 CDD DEADc_DDX3_DDX4 90 319 IPR044763 GO:0003724|GO:0005524
Lan12g1172 581 Pfam DEAD/DEAH box helicase 113 302 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1172 Lan-Chr12 17958525 17961707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1172 89 489 Eukaryotic Initiation Factors Gene Family AT3G19760 31.343 5.97e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1172 K11594 - gmx:100791226 693.73