Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1158 ATGTCTAGCTGCAGCGTTGATGTTGCTTCTGAGCAACTTTGCTACATCCCTTGCAAATTCTGCAACATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCCTCTTTGACATTGTGACCGTTCGATGTGGCCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCCCTGTCATGGCAAGATGTTCAGGCACCAAACCACTGCAATAATCCAGAGTATAGGATTGACACTAGTGGCTCCACTTCCAAATGCAACAACAGGATTCCAATGCGTGCACCCACAACTCATGCCACTGAGGAAAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTACAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAGGCCAATAACCCTGATATTAGTCACAGAGAAGCATTCAGCAATGCTGCAAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGATGATGTTGGAGAGCAGCAACAATCAAGTTAAGATGGAGAACATACGTCTCTAG 534 0.4682 MSSCSVDVASEQLCYIPCKFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQAPNHCNNPEYRIDTSGSTSKCNNRIPMRAPTTHATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSNAAKNWAHFPHIHFGMMLESSNNQVKMENIRL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1158 177 PANTHER AXIAL REGULATOR YABBY 5 1 174 - -
Lan12g1158 177 Gene3D High mobility group box domain 98 156 IPR036910 -
Lan12g1158 177 PANTHER PROTEIN YABBY 6-RELATED 1 174 IPR006780 GO:0007275
Lan12g1158 177 SUPERFAMILY HMG-box 101 154 IPR036910 -
Lan12g1158 177 Pfam YABBY protein 9 161 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1158 Lan-Chr12 17890539 17894136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1158 8 172 C2C2-YABBY Transcription Factor Family AT2G26580 75.758 1.17e-87 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lan12g1158 YABBY 2.6e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1158 K25796 - gmx:100804731 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1158 12 17890539 17894136 Lan1g1124 1 21283266 21286998 LSH