Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1150 ATGGAACTTCAACTAGGTCTTGCTCTTCCAAACCATTCTTCCAAAACTCTTAACCATGATTCCTCCCACAATAACAAACGTAGTTTCTCTAACTTCTTTCACCATGCTGATACCCATAACAATACATCACAGGTTATGCTTCCCACTCTATCTCTCCTTTCATTAACGCCTTCACACTCATGCAACCTTCATGATAATCGCCTTAGCACCAAGAACGATGAGAATGATGCAGTGGGTTGGCCTCCGGTAAATTCATATAGGAAGAAACTTCGTTATGACAACTATGTGGATGAGGTTGCAGAGAATGATCAAATGGTGTGGATTCATCATCATCATCATAGTCGTAGTTCAGTTGCTATGAGAAGATCCAATATGCTATACGTTAAGGTGAAGATGGAGGGTAATGGAATTGCAAGAAAGATTAATCTTAACATGCACCATTCATATCAGACACTCAAGGAAACCTTGATGGACATGTTTGGAAAATGTCATCAACATTCAAAGTGTTATGAGCTAGCTTATCAGGACCAAGAAGGTGATTGGCTTCTTGCTGATGATGTACCATGGAAAAGTTTCACTCAATGTGCACAACGGCTCAAATTGGTGAAGAACAGCAGATATAGAATAATGCCAGCATGCATAGCCTCAAGTTGA 654 0.4006 MELQLGLALPNHSSKTLNHDSSHNNKRSFSNFFHHADTHNNTSQVMLPTLSLLSLTPSHSCNLHDNRLSTKNDENDAVGWPPVNSYRKKLRYDNYVDEVAENDQMVWIHHHHHSRSSVAMRRSNMLYVKVKMEGNGIARKINLNMHHSYQTLKETLMDMFGKCHQHSKCYELAYQDQEGDWLLADDVPWKSFTQCAQRLKLVKNSRYRIMPACIASS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1150 217 SUPERFAMILY CAD & PB1 domains 115 201 - -
Lan12g1150 217 ProSiteProfiles PB1 domain profile. 125 204 IPR000270 GO:0005515
Lan12g1150 217 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 204 - -
Lan12g1150 217 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 204 IPR003311 GO:0005634|GO:0006355
Lan12g1150 217 MobiDBLite consensus disorder prediction 9 23 - -
Lan12g1150 217 Gene3D - 126 212 - -
Lan12g1150 217 MobiDBLite consensus disorder prediction 1 23 - -
Lan12g1150 217 Pfam AUX/IAA family 17 163 IPR033389 -
Lan12g1150 217 Pfam AUX/IAA family 168 205 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1150 Lan-Chr12 17833049 17834297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1150 127 210 B3 DNA Binding Superfamily AT5G20730 32.955 4.41e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan12g1150 AUX_IAA 8.8e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1150 K14484 - gmx:100808466 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1150 12 17833049 17834297 Lan1g0244 1 1768110 1769221 LSH