Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1134 ATGTCATCCGAAATCGAGGTCGTGGAAGAGGTTCAATCCCGAGAACATCAATTGCCATTGGCTTCTTCCGCTTCATCCTCCGCCGGCGCCGAAGTCGCGGAGGAGAGCCTCCGCAATGATGTTTACACGGCGGCAGCTTACGGTGATTTGGAGAAGCTGCATCGATTGGTGGAGCAAGAGGGCTGCACTGTCACGGAGCCAGATGGGTTGGGTTACTACGTGCTTCAGTGGGCTGCACTTAATAATCGCACCGCCGCTGCTCAGTACATTATTGAGCATGGGGGAGATGTAAATGCAACGGATCATACGGGACAGACAGCATTACATTGGAGTGCAGTTCGGGGTGCTATCCAAGTTGCTGAGGTTTTACTCCAAGAGGGTGCCCGAGTGAATGCTTCTGATATGAATGGGTATCAGACAACACATGTTGCTGCTCAGTATGGTCAGACAGCTTTTCTTTACCATGTTGTTTCAAAATGGAATGCCGACCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACATTGGGCTGCGTACAAAGGTTTTGCTGATTCTATACGTCTGCTGTTATTTCTTAATGCGCATAGGGGACGCCAAGATAAGGAGGGTTGCACATCTCTTCATTGGGCTGCTATCCGGGGTAACTTGGAGGCCTGTACTGTGTTAGTACAGGCTGGCAAGAAGGAAGACCTGATGGTGACTGATAATAGTGGCCTTACACCAGCTCAGCTTGCATCTGATAAGAATCATAGACAAGTTGCCTTTTTCCTTGGAAATGCTCGAAGACTGCTTGAGAAACGCTGTGATGGGAACAGCCGCCTTGGAAAGATTTCCAAATTGGGACTTGCTCCTATACTATGGTGTATAATTTTTCTGCTCTTGATCACCTATATTCATTCGGTCATTTTGGCAACAAATCTGCCAAAGTTGCCAGCTACAGCTGCCCTTCTTGCATGGTTTGGAGTTTTACTTGCAACTGTGGGATTGGCTATGTTTTACAAGTGTAGCAGCAAGGATCCAGGTTACATCAAAATGAACGAGCATGACACTGAGAATATGAAAGATGATGAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAACTGGACCCAGCTTTGTGCAACGTGCAAGATTGTCAGGCCTCTTCGCGCGAAACATTGTTCTACCTGTGATCGTTGTGTGGAACAATTTGATCATCATTGTCCCTGGGTATCAAATTGCATTGGCAAGAAGAACAAATGGGATTTCTTTGTTTTTCTTGTTCTCGAAGTTTCAGCAATGTTGGTCACCGGTGGAGTATCGCTTACAAGAGTATTGACTGATCCACTTGCTCCTTCTTCATTTGGAGCATGGATTCAGTATGTTGGTAAGAATCACGTTGGTGCAATATCATTTTTAATTGCTGATTTTTTCCTATTCTTCGGTGTGTTCGCTTTGACAGTTGTTCAGGGTAGTCAGATATCACGCAATATTACAACAAATGAAATGGCAAATGCAATGCGGTATAGCTACCTCAGAGGTCCAGGTGGTAGATTTAGAAACCCATATGATCATGGTATCAAGAAGAATTGTTCTGATTTCTTGATCAATGGATACAATGAAGACGTGGAGTGCATCGAAGAAGTAGGTAATTCAGAGGAGGGTATCGGAATGGTGCCCATGGCAAGGAGCTCAAACTTAACAAACGGAGACTCACATTCTCATTTTAATCATGCAACAGGCAGTGGAAATAGCCATGTTATTGATGTGAATTCCAACAGTACCACCAACTCCAAAACACATCATGGTCATATTAATGGCCATGTTCATTCTGCACATTGTAGCCATAATAATAATAATCATGCCAGAACTAAAAATGACAGCATTCCAAAGGGCTTAGGTCTTGGCCTTGGAAGGAATGCCAGATCTGTTGCACCCTCATAA 1941 0.4446 MSSEIEVVEEVQSREHQLPLASSASSSAGAEVAEESLRNDVYTAAAYGDLEKLHRLVEQEGCTVTEPDGLGYYVLQWAALNNRTAAAQYIIEHGGDVNATDHTGQTALHWSAVRGAIQVAEVLLQEGARVNASDMNGYQTTHVAAQYGQTAFLYHVVSKWNADPDVPDNDGRSPLHWAAYKGFADSIRLLLFLNAHRGRQDKEGCTSLHWAAIRGNLEACTVLVQAGKKEDLMVTDNSGLTPAQLASDKNHRQVAFFLGNARRLLEKRCDGNSRLGKISKLGLAPILWCIIFLLLITYIHSVILATNLPKLPATAALLAWFGVLLATVGLAMFYKCSSKDPGYIKMNEHDTENMKDDEPLLKIEINNPALLAGNWTQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFVFLVLEVSAMLVTGGVSLTRVLTDPLAPSSFGAWIQYVGKNHVGAISFLIADFFLFFGVFALTVVQGSQISRNITTNEMANAMRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDVECIEEVGNSEEGIGMVPMARSSNLTNGDSHSHFNHATGSGNSHVIDVNSNSTTNSKTHHGHINGHVHSAHCSHNNNNHARTKNDSIPKGLGLGLGRNARSVAPS* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1134 646 PANTHER - 1 603 - -
Lan12g1134 646 Pfam Ankyrin repeat 170 191 IPR002110 GO:0005515
Lan12g1134 646 Pfam Ankyrin repeats (many copies) 197 246 IPR002110 GO:0005515
Lan12g1134 646 ProSiteProfiles Ankyrin repeat region circular profile. 170 191 - -
Lan12g1134 646 SMART ANK_2a 203 234 IPR002110 GO:0005515
Lan12g1134 646 SMART ANK_2a 70 99 IPR002110 GO:0005515
Lan12g1134 646 SMART ANK_2a 103 132 IPR002110 GO:0005515
Lan12g1134 646 SMART ANK_2a 238 267 IPR002110 GO:0005515
Lan12g1134 646 SMART ANK_2a 36 66 IPR002110 GO:0005515
Lan12g1134 646 SMART ANK_2a 170 202 IPR002110 GO:0005515
Lan12g1134 646 Pfam Ankyrin repeats (3 copies) 43 134 IPR002110 GO:0005515
Lan12g1134 646 MobiDBLite consensus disorder prediction 617 646 - -
Lan12g1134 646 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Lan12g1134 646 ProSiteProfiles Ankyrin repeat profile. 103 135 IPR002110 GO:0005515
Lan12g1134 646 Pfam DHHC palmitoyltransferase 376 504 IPR001594 GO:0016409
Lan12g1134 646 Gene3D - 9 156 IPR036770 -
Lan12g1134 646 ProSiteProfiles Ankyrin repeat profile. 203 235 IPR002110 GO:0005515
Lan12g1134 646 PANTHER PROTEIN S-ACYLTRANSFERASE 24 1 603 - -
Lan12g1134 646 ProSiteProfiles Ankyrin repeat region circular profile. 103 134 - -
Lan12g1134 646 ProSiteProfiles DHHC domain profile. 377 427 - -
Lan12g1134 646 SUPERFAMILY Ankyrin repeat 40 259 IPR036770 -
Lan12g1134 646 ProSiteProfiles Ankyrin repeat region circular profile. 203 227 - -
Lan12g1134 646 Gene3D - 157 264 IPR036770 -
Lan12g1134 646 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1134 Lan-Chr12 17689696 17696666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1134 142 245 Acyl Lipid Metabolism Gene Families AT5G53470 32.381 1.38e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1134 K20032 - gmx:100777470 1121.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1134 12 17689696 17696666 Lan1g1153 1 21545024 21552163 LSH
Lan12g1134 12 17689696 17696666 Lan1g0269 1 1976124 1983101 LSH