Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1127 ATGGGAAGTAATGCTACTGAAAATATCCCTAGCCATAGCGGAACTGAAAGTTCAGAACCCACTATTGAGATAAAGATCAAAACATTGGACTCACAAACTTACACCCTCAGAGTGGATAAAGAGATGCCAGTTCCTGCTCTGAAAGAACAGATTGCTTCCGTAACTGGGGTATTATCAGAGCGGCAGCGCTTAATTTGCCAAGGGAAAGTTCTAAAGGATGATCAACTCCTGTCTGCTTACCATGTTGAAGACGGTCATACCTTGCATCTGGTTGTCAGGCAACCCGATTTACCATCTCCTGGAAATTCATTCGACCACTCAGTGCCAGACCCAAATTCAGGCACAAGTCATGGTCACAGCAATCAAGTAGCCCCTGGTGTATTTATTGAAACTTTCGACGTGCCTCTTCAGGGAGATGGAATTTCTCCCGATTTTCAGAGGGTTGTTTCTGCTGTTCTAGGATCTATTGGAATTTCAATGAATGGCAGTGATGGGATTGACACCAGGGATTCCCAAGGCTTTGGAAGAACTTCAAATTCTAGTGGCATACCAGATTCAATTTTATCTGATAGAATGCACAATATCTTTGGACCTCCTTCTGTGGGGTCTTTACAGCCTCCTGTCATTCCTGATTCTTTGACAACATTGTCCCAATACCTGAGTCGTATAAGCCATGAATTTGATGCAATTGTCAGAGAAGGGGTGAACAACGGCCAAGCTGCTGAAGATCATAGGAGTGAAGAAATGGGATCCATTTCTTCACGGTCGGGTTCAACAGCAGAAGGGATTCCATCACCCGCATCCTTGGCAGAAGTTTTGCGTTCTAGTAGACGAATGATTGTTGAACAAGTTGGGGAGTGCCTACTTCAACTTGCAAGCCAGCTGGAGAATCAAGCAAATATAACCGATTCCTTGTTGCGGTCAAGCACTCAGTCTAGGGCTATGAGGACTGGAGTTCTATTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGCCGTACAACTATGACGACACGTTTGGGTCAAACAGCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCATCTGGTCCTAACCATATCATGGTTCAGCCTATTCCTTTTCATCCCGGAGCAAGCTTTGGTGCTGTCCCTGTAGTCACTACACAGTCTAACTCAAGTTTGGGTAGTGGTCTTGGCTCGAGTTTTATCCCAAGGCGTATCGACATACAGATACGACGAGGTACATCAACAACCACATCCAATGCCAATCAAGAAGAGCGCAATGATACTCAGTCTGCTGCAGTTCAAAGAAACCAAGGTGAAAGTTCTGTTAATCAGGCACCTTCAAGGCGTTCAAATGCATCTCTTGCTGGGGAGCCAGGAATAAGAGTAGTGCCAATTAGAACCATGGTTGCTGCTGTACCAGGTCCCATAGGTCGCTTGCCTTCAGAACAATCTGGTAATTCTATGGGTTTTTACTACCCAGTTCTTGGGAGACTGCAACCTGTATCATATGGACATGCAAATAGTGAACAGGGATCTCAGCCACCAAGTCAGCATCATGCTGCACAACAATCAACTATTCAATCCACATTGCAAAGGCAAGGCATGGTTGATTCTGCAAGCAATGGATCCATACTGACTCCTAGCACAAGACAAGAGCCATCAAACTCTCGTGTTGTGAATATCAATATTCTGTCTGCTGGTGGGGCTGAAAACAACCCAGAATCTGAGAGACAGATACAAAGCAGTGTACTTCAACACTTGAGGGCTCTCTTTCCTGGCGGAGATATTCATGTTGAGGATTCAAGTTTACAGGGAACCGCTGCAGGTGCTATCTCAGAGCATGCTGCAACATTAGGGGATTCCTCCCATGTTCCTGAAGCAGAACCTAGAGCTAGTGATGAAGGAATTTTTTTGTCTAATATACTTCGTGAGATCATGCCCCTCATATCTCAACGAGCAGGATCTGACGGAAATCCTTCAGTGGATCAAATGGCTCAAGATTCTTCTACCCGGGTTGAAACTGATGCTGGGACATCACGCCGAGGGAGCGGTTCTGAACTAGACCTACCAAATCCAAAACGTCAAAAGATGGAGTGA 2097 0.4526 MGSNATENIPSHSGTESSEPTIEIKIKTLDSQTYTLRVDKEMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPSPGNSFDHSVPDPNSGTSHGHSNQVAPGVFIETFDVPLQGDGISPDFQRVVSAVLGSIGISMNGSDGIDTRDSQGFGRTSNSSGIPDSILSDRMHNIFGPPSVGSLQPPVIPDSLTTLSQYLSRISHEFDAIVREGVNNGQAAEDHRSEEMGSISSRSGSTAEGIPSPASLAEVLRSSRRMIVEQVGECLLQLASQLENQANITDSLLRSSTQSRAMRTGVLFYNLGAFLLELGRTTMTTRLGQTASEAVVNGGPAVFISPSGPNHIMVQPIPFHPGASFGAVPVVTTQSNSSLGSGLGSSFIPRRIDIQIRRGTSTTTSNANQEERNDTQSAAVQRNQGESSVNQAPSRRSNASLAGEPGIRVVPIRTMVAAVPGPIGRLPSEQSGNSMGFYYPVLGRLQPVSYGHANSEQGSQPPSQHHAAQQSTIQSTLQRQGMVDSASNGSILTPSTRQEPSNSRVVNINILSAGGAENNPESERQIQSSVLQHLRALFPGGDIHVEDSSLQGTAAGAISEHAATLGDSSHVPEAEPRASDEGIFLSNILREIMPLISQRAGSDGNPSVDQMAQDSSTRVETDAGTSRRGSGSELDLPNPKRQKME* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1127 698 MobiDBLite consensus disorder prediction 502 555 - -
Lan12g1127 698 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Lan12g1127 698 MobiDBLite consensus disorder prediction 412 456 - -
Lan12g1127 698 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lan12g1127 698 PRINTS Ubiquitin signature 53 73 IPR019956 -
Lan12g1127 698 PRINTS Ubiquitin signature 74 95 IPR019956 -
Lan12g1127 698 MobiDBLite consensus disorder prediction 653 685 - -
Lan12g1127 698 MobiDBLite consensus disorder prediction 238 264 - -
Lan12g1127 698 SUPERFAMILY Ubiquitin-like 16 101 IPR029071 -
Lan12g1127 698 MobiDBLite consensus disorder prediction 105 120 - -
Lan12g1127 698 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Lan12g1127 698 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 698 - -
Lan12g1127 698 MobiDBLite consensus disorder prediction 503 555 - -
Lan12g1127 698 MobiDBLite consensus disorder prediction 651 698 - -
Lan12g1127 698 MobiDBLite consensus disorder prediction 94 120 - -
Lan12g1127 698 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 698 - -
Lan12g1127 698 MobiDBLite consensus disorder prediction 1 21 - -
Lan12g1127 698 Gene3D - 15 106 - -
Lan12g1127 698 SMART ubq_7 22 93 IPR000626 GO:0005515
Lan12g1127 698 MobiDBLite consensus disorder prediction 412 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1127 Lan-Chr12 17642883 17652294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1127 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 6.48e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1127 K23390 - gmx:100783070 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1127 12 17642883 17652294 Lan1g0276 1 2029601 2040174 LSH