Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1125 ATGGACAAAAAAAATTCATCTTTTTCAACTTCCACTGTTAATTCACTTCCTCTTGAAAGCATATGTGAGAATTCAGAAATTGCTAACAAAAAACAGAACCCTATGAGTTTTGTCCCTGTTCTTCGGTCCGGAGAGTGGTCTGATATTGGAGGCCGCCCTTACATGGAGGATACCCACATATGCATTGGAGACTTGGCAAAGAAATTTGATTATGACACACTTTGTGAGGAAACTGTTTCCTTTTATGGAGTATTTGATGGACATGGAGGGAAGGCTGCTGCTCAATTCGTCCGTGATCACTTGCCAAGGGTGATTGTTGAGAATGCGGACTTTCCTTTCGAACTCGAGAAGGTAGTCAAGAAGTCATTTATAGAGACTGATGCAGAGTTTGCAAAAACATGCTCTATTGAGTCTTCCTTGTCTTCTGGTACAACTGCACTCACTGCGATTATATTTGGAAGGTCTTTACTTGTAGCGAATGCTGGAGATTGCCGAGCTGTTTTATGCCGTAATGGAAGGGCTATAGAAATGTCCAAAGATCATAGACCTTATTGCATTAAAGAAAGGAAGCGGATTGAGTCCCTAGGTGGATTCGTCGATGATGGTTACCTGAATGGCCTATTAGGTGTTACTCGTGCTCTAGGTAACTGGCATCTTGAAGGAATGAAAGAAAAGAGTGGAAGAGGTGGACCATTAATTGCTGAGCCTGAACTTAAACTGGTGACATTGACCAAAGAAGATGAATTATTGATCATTGGCAGTGATGGAATCTGGGATGTATTTCGCAGCCAAAACGCGGTTGATTTTGCTCGTAGGAGGCTCCAAGAACATAATGATGTGAAACAATGTTGCAAGGAAATAGTCGACGAAGCAATGAAGAGAGGAGCAACAGATAACTTGACAGTTGTGATGGTATGTTTTCACTCAGAACCACCACCCCATATGGTTGTAGAGAGAGCCAGAGTCAGGAGAAGCATATCTGTTGAGGGACTTCAGAATCTTAAATGCCTGCTAGAAGAATAA 1023 0.4203 MDKKNSSFSTSTVNSLPLESICENSEIANKKQNPMSFVPVLRSGEWSDIGGRPYMEDTHICIGDLAKKFDYDTLCEETVSFYGVFDGHGGKAAAQFVRDHLPRVIVENADFPFELEKVVKKSFIETDAEFAKTCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLCRNGRAIEMSKDHRPYCIKERKRIESLGGFVDDGYLNGLLGVTRALGNWHLEGMKEKSGRGGPLIAEPELKLVTLTKEDELLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIVDEAMKRGATDNLTVVMVCFHSEPPPHMVVERARVRRSISVEGLQNLKCLLEE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1125 340 ProSiteProfiles PPM-type phosphatase domain profile. 42 307 IPR001932 -
Lan12g1125 340 Pfam Protein phosphatase 2C 54 299 IPR001932 -
Lan12g1125 340 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Lan12g1125 340 Gene3D - 22 311 IPR036457 -
Lan12g1125 340 PANTHER PROTEIN PHOSPHATASE 2C 9 328 IPR015655 GO:0004722|GO:0006470
Lan12g1125 340 CDD PP2Cc 42 307 IPR001932 -
Lan12g1125 340 SMART PP2C_4 32 305 IPR001932 -
Lan12g1125 340 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 9 328 - -
Lan12g1125 340 SUPERFAMILY PP2C-like 32 309 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1125 Lan-Chr12 17634730 17637557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1125 31 339 PP2C-type Phosphatase Gene Family AT2G25620 58.521 6.23e-133 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lan12g1125 PP2C 6.8e-70 CL0238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1125 12 17634730 17637557 Lan1g0278 1 2045090 2055370 LSH
Lan12g1125 12 17634730 17637557 Lan15g0255 15 2900310 2904208 PCT
Lan15g0255 15 2900310 2904208 Lan12g1125 12 17634730 17637557 PCT