Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1121 ATGGCATATAATGAGCATCTAGCATTCCAGGGTTTCACTGAGGAAGAGCAAGAGTTAAGCCCTGATGAGAGTACAAGAGGAGGAGGAGGAGGAGGAGGAGGAGACATGCAGCAGCACCACCACCACCATAGGGTGGTGCCACCGACATGGCTCATCAACAACAACAACGCTACTCGTCAGCAACAGAATTTTCTTCACTTACAAACTCAGAAGAGCATGGATCGGATGAGTAATTCAGAATCAGAGGAACTTGGAGAATATAAAGCTCATATTTTGGGACACCCCCTTTATGACCAACTCTTATCTGCTCATGTTTCGTGTCTTAGGATTGCAACCCCAGTTGACCAGCTTCCTAGGATTGATGCTCAGTTGCAACACTCGCAGCGCGTGGTTGATAAGTATTCTGCCCTTGCTAATGGGGTCCTTGATCAGAAAGAACTTGATCACTTCATGACGCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAGCAACTGCAACAACATGTACGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTTCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAAGTGGTGCAACAATGTCAGATGATGAAGATGAACAAGCAGAGAGCAATGCCAACTTATATGAAGGTAGCATGGATGGTGGTGATAGTCTTGGCTTTGGTCCTCTTGTTCCCACTGAAAGTGAAAGATCTTTGATGGAACGAGTAAGGCATGAATTGAAGCATGAACTAAAACAGGGTTACAAGGAGAAGATAGTAGACATAAGAGAAGAAATTCTGCGAAAGAGACGAGCAGGAAAGCTTCCGGGGGACACGACGTCCCTATTGAAAGCATGGTGGCAGTCACATTCTAAATGGCCCTACCCTACTGAGGAAGACAAAGCTAGGTTGGTGCAAGAAACAGGCTTGCAATTAAAGCAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGAACTGGCATACTAATCCCACAACCTCTACCAGCTCCAAAAGCAAGCGCAAGAGCAGCGCAGGTGAAAGCAGTAACCAGAGCTTCATGTGA 1074 0.4572 MAYNEHLAFQGFTEEEQELSPDESTRGGGGGGGGDMQQHHHHHRVVPPTWLINNNNATRQQQNFLHLQTQKSMDRMSNSESEELGEYKAHILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQHSQRVVDKYSALANGVLDQKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGSGATMSDDEDEQAESNANLYEGSMDGGDSLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPTTSTSSKSKRKSSAGESSNQSFM* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1121 357 Gene3D - 275 352 - -
Lan12g1121 357 MobiDBLite consensus disorder prediction 192 212 - -
Lan12g1121 357 SMART KNOX2_2 137 192 IPR005541 GO:0003677|GO:0005634
Lan12g1121 357 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 35 350 - -
Lan12g1121 357 ProSiteProfiles ELK domain profile. 249 269 IPR005539 GO:0003677
Lan12g1121 357 SMART HOX_1 271 336 IPR001356 GO:0003677
Lan12g1121 357 MobiDBLite consensus disorder prediction 326 357 - -
Lan12g1121 357 Pfam KNOX1 domain 87 128 IPR005540 GO:0003677|GO:0005634
Lan12g1121 357 SMART KNOX1_2 85 129 IPR005540 GO:0003677|GO:0005634
Lan12g1121 357 MobiDBLite consensus disorder prediction 1 41 - -
Lan12g1121 357 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 350 - -
Lan12g1121 357 Pfam KNOX2 domain 143 191 IPR005541 GO:0003677|GO:0005634
Lan12g1121 357 SUPERFAMILY Homeodomain-like 271 336 IPR009057 -
Lan12g1121 357 CDD homeodomain 272 333 IPR001356 GO:0003677
Lan12g1121 357 ProSiteProfiles 'Homeobox' domain profile. 269 332 IPR001356 GO:0003677
Lan12g1121 357 SMART ELK_2 249 270 IPR005539 GO:0003677
Lan12g1121 357 Pfam Homeobox KN domain 289 328 IPR008422 GO:0003677|GO:0006355
Lan12g1121 357 Pfam ELK domain 249 270 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1121 Lan-Chr12 17610584 17615871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1121 87 352 Homeobox Transcription Factor Family AT5G11060 84.074 1.86e-167 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan12g1121 KNOX2 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1121 - - gmx:100781997 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1121 12 17610584 17615871 Lan14g0027 14 473405 481552 PCT
Lan14g0027 14 473405 481552 Lan12g1121 12 17610584 17615871 PCT