Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1117 ATGTCAGGTTGGGACGAAGGAGGCATATATTACAGCGACCAAGCGAATTCATGGGAAGGAGAAGCCGATGCTTCAAACCACTCTCTCCTCTTGAAATTCAATGAGTTCATTCGTAACTTCGAGTCTCACAACAATGTCTTCCCTTACCGTGAATCCCTCCTCCACAACCCTAACTCCCTTCTCATCGACGTCGAGGATCTCAACTCCTTCGATCCTGAACTCCCCGCAAAACTCCGCTCCTCGCCCTCCGATTTCCTCCCCTTGTTCGAAACCGCCGCCGCTCAAGTTCTTTCCGGTCTCAAGACCAAGGTTGTTGGTGATTCAGGGCTCATGGAAGATGCCGCTACTGGTGATGTTCAAATCTTGCTCACTTCCAAGGAGGATGCTATCTCAATGAGATCGCTTGGGGCTCAATACATATCAAAGCTTGTAAAAATTTCTGGGATTACTATTGCTGCATCAAGGACTAAGGCTAAGGCAACTTATGTAACCCTGATCTGTAAGAATTGCAAGAACGGGAAGCAAGTTCCATGTCGCCCTGGACTTGGGGGAGCCATTGTTCCCCGTTCCTGTGATCATGTTCCTCAGCCTGGAGAAGAACCATGCCCAATTGATCCATGGCTTGTGGTTCCTGACAAGAGCAAGTATGTTGATCAACAAACCTTGAAACTTCAAGAAAACCCAGAGGATGTTCCAACTGGAGAGCTTCCTAGAAATCTACTTCTCTCTGTCGATCGTCGTCTTGTTCAAAAAGTGGTACCTGGCTCAAGATTGACAGTCATTGGAATTTATAGTATTTACCAAGCTTCCAACTCCTCTACATCCCACAAGGGAGCAGTTGCTGTTAGACAGCCTTATATTAGGGTTGTAGGAATGGAAGAATCAAATGATGCCAAGTCTCAAGGCGATGCTGCATTTACAACTGAAGAGATAGAAGAATTCAAAAAATTTGCTGCAGAACCTGATGCCTATAAGAATATATGCTCTAAGATTGCTCCTTCTATATTTGGGCATGATGATATAAAAAAGGCTGTAGCATGTCTTCTGTTTAGTGGATCAAGAAAGAATTTGCCTGATGGAGTGAAGTTAAGAGGTGATATCAATGTCTTGCTTCTAGGGGATCCATCTACAGCGAAGTCCCAGTTTCTCAAGTTCGTAGAAAAGACAGCTCCTATTGCTGTTTATACTTCTGGAAAAGGCTCATCAGCTGCTGGTCTCACAGCTTCTGTAATTCAAGATAGCAGCACTCGTGAATTTTATCTTGAAGGAGGAGCCATGGTCTTGGCAGATGGAGGTGTTGTCTGCATTGATGAGTTCGACAAGATGAGACCAGAAGATAGGGTTGCCATTCATGAAGCCATGGAACAACAAACTATATCCATAGCCAAAGCTGGGATAACAACTGTTCTTAATTCAAGGACTTCTGTTCTTGCTGCTGCTAACCCCCCATCAGGACGTTATGATGATCTTAAGACTGCACAGGATAATATTGATTTGCAGACAACTATTCTTTCTAGGTTTGACTTAATCTTCATTGTGAAGGACAACAGAAACTACAATCAAGACAAGATCATGGCTAGTCATATCATAAAGGTTCATGCATCAGCTGATGCAACCATGGGTGAGAACAGGGTTCCGAAAGAAGAGAATTGGCTGAAGAGGTATTTACAATATTGTCGAGCAGTATGCCATCCTCGTCTGTCAGAATCTGCAGCATCACTACTGCAGAATAATTATGTGAAAATCAGACAGGATATGAGGCAGCAAGCAAATGAAACTGGAGAAGCTGCTGCAATACCAATTACTGTAAGGCAGCTGGAAGCTATTATTAGGTTGAGTGAGGCACTTGCCAAGATGAAATTATCTAATTCTGCTAATGAGGAGAATGTGCAAGAGGCAATGAAACTTTTCAATGTGTCTACAATGGATGCAGCCAAGTCTGGAATAAACCAACAAATAAATCTTACACCTGATATGGCAAATGAAATAAAGCAAGCAGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCAGAAAGAAGGCTGATTGATGACCTTAGCAGAATGGGAATGAATGAATCTATTGTGAGAAGAGCTCTTTTAATTATGCACCAGAGGGAGGAAGTAGAATACAAGCGAGAAAGGCGTGTTATATACAGGAAAGCATAA 2178 0.4288 MSGWDEGGIYYSDQANSWEGEADASNHSLLLKFNEFIRNFESHNNVFPYRESLLHNPNSLLIDVEDLNSFDPELPAKLRSSPSDFLPLFETAAAQVLSGLKTKVVGDSGLMEDAATGDVQILLTSKEDAISMRSLGAQYISKLVKISGITIAASRTKAKATYVTLICKNCKNGKQVPCRPGLGGAIVPRSCDHVPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRRLVQKVVPGSRLTVIGIYSIYQASNSSTSHKGAVAVRQPYIRVVGMEESNDAKSQGDAAFTTEEIEEFKKFAAEPDAYKNICSKIAPSIFGHDDIKKAVACLLFSGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDNRNYNQDKIMASHIIKVHASADATMGENRVPKEENWLKRYLQYCRAVCHPRLSESAASLLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIIRLSEALAKMKLSNSANEENVQEAMKLFNVSTMDAAKSGINQQINLTPDMANEIKQAETQIKRRIGIGNHISERRLIDDLSRMGMNESIVRRALLIMHQREEVEYKRERRVIYRKA* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1117 725 ProSiteProfiles MCM family domain profile. 323 529 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lan12g1117 725 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 133 148 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lan12g1117 725 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 159 171 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lan12g1117 725 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 283 295 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lan12g1117 725 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 559 574 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lan12g1117 725 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 635 652 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Lan12g1117 725 SMART mcm 128 642 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lan12g1117 725 Gene3D - 132 267 IPR012340 -
Lan12g1117 725 Pfam MCM N-terminal domain 32 102 IPR027925 -
Lan12g1117 725 Gene3D - 304 659 IPR027417 -
Lan12g1117 725 Pfam MCM AAA-lid domain 551 640 IPR041562 -
Lan12g1117 725 Pfam MCM OB domain 132 267 IPR033762 -
Lan12g1117 725 Pfam MCM P-loop domain 311 533 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lan12g1117 725 Gene3D - 159 217 - -
Lan12g1117 725 PRINTS Mini-chromosome maintenance (MCM) protein family signature 364 379 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lan12g1117 725 PRINTS Mini-chromosome maintenance (MCM) protein family signature 424 438 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lan12g1117 725 PRINTS Mini-chromosome maintenance (MCM) protein family signature 452 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lan12g1117 725 PRINTS Mini-chromosome maintenance (MCM) protein family signature 476 488 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lan12g1117 725 PRINTS Mini-chromosome maintenance (MCM) protein family signature 503 511 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lan12g1117 725 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 53 671 - -
Lan12g1117 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 640 IPR027417 -
Lan12g1117 725 SUPERFAMILY Nucleic acid-binding proteins 33 289 IPR012340 -
Lan12g1117 725 ProSitePatterns MCM family signature. 432 440 IPR018525 GO:0003677|GO:0005524|GO:0006260
Lan12g1117 725 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 53 671 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lan12g1117 725 CDD MCM5 326 640 - -
Lan12g1117 725 Gene3D - 25 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1117 Lan-Chr12 17574527 17579772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1117 1 725 Core DNA Replication Machinery Family AT2G07690 76.891 0.0 1167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1117 K02209 - jre:109019482 1239.56