Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1103 ATGCAAGGCCTGAACAACTCTTCAGAAATGAACCATTTAGACGATGATTTCCTCAAACAAATTCTCTCTACCCTTCCTTCTTCATCTTGGTCCCTCGATGAAACCACCAATATCCCTTTCCCTTCTTCCTACGATGAACAAAACAACTTGAACTCTAAGTTCCAAAATCATCACATCACTCCCACTTCAAGCAATGCCGCTGCTCTTAGTCTCATGCTTCATCAACAGTTTCTCATGTCTAGAGGAACCGCTGGAGATTTTGACTCATCCCAAAACGACGTCGTCGATGCCTCCTCCTTCAAATCTCACATTCCGGGTGGTGATGGTTCCGTTCAAGCTTTGTTTAACGGTTTCTCTGGATCTCTCCAGGGCGCTTCCAACCACACTAATCATTTTCAACATCCTCAGGGTGAGGGAGGTTCGAATCAGATGCAAGGACAAAGTTTTGGAGCAACGAACCAAGCTCCAACCGGTGCCACACCGGCTCAGCCGAAACAGAGGGTTAGGGCTAGAAGAGGTCAAGCCACCGATCCACACAGCATCGCTGAGAGGTTACGAAGGGAAAGAATTGCAGAAAGGATGAAGGCCCTGCAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCCTCTATGCTGGATGAGATCATTGACTATGTGAAGTTCCTACAGCTTCAAGTCAAGGTTTTGAGCATGAGCAGATTGGGCGGTGCATCTGCTGTTGCTCCCCTTGTTGCTGATTTGTCCTCTGAGGGAGGCGGTGACTGTATCCAAGCCAAAACAAACGGTGGTTCCCAACCCCGCAACTCAACGGCGTCGTCCTCCAACGACAGCCTCAGCATGACGGAGCAGCAGGTGGCGAAGCTCATGAAGGAAGACATGGGATCTGCTATGCAATATCTTCAGGGTAAAGGTCTCTGTCTTATGCCTATTTCTCTCGCTACAGCAATATCTACTGCCTCGTGTCACTCTAGGAACCCTTTGATCAATGGTAACCCCAACCCTCTCATCCCATCCAACGGTGATGGCCCACCCTCTCCCGGTATTTCCGTCATGACCGTGCAATCCGGTATTGTTGGTAACGGTGGCATGGATAACGCCGTCAAAGACTCTACCTCCGTTTCAAAACCCTGA 1134 0.4938 MQGLNNSSEMNHLDDDFLKQILSTLPSSSWSLDETTNIPFPSSYDEQNNLNSKFQNHHITPTSSNAAALSLMLHQQFLMSRGTAGDFDSSQNDVVDASSFKSHIPGGDGSVQALFNGFSGSLQGASNHTNHFQHPQGEGGSNQMQGQSFGATNQAPTGATPAQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGASAVAPLVADLSSEGGGDCIQAKTNGGSQPRNSTASSSNDSLSMTEQQVAKLMKEDMGSAMQYLQGKGLCLMPISLATAISTASCHSRNPLINGNPNPLIPSNGDGPPSPGISVMTVQSGIVGNGGMDNAVKDSTSVSKP* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1103 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Lan12g1103 377 PANTHER TRANSCRIPTION FACTOR BHLH69 13 332 - -
Lan12g1103 377 MobiDBLite consensus disorder prediction 125 161 - -
Lan12g1103 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 234 IPR036638 GO:0046983
Lan12g1103 377 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 332 - -
Lan12g1103 377 SMART finulus 180 229 IPR011598 GO:0046983
Lan12g1103 377 MobiDBLite consensus disorder prediction 125 184 - -
Lan12g1103 377 MobiDBLite consensus disorder prediction 170 184 - -
Lan12g1103 377 Gene3D - 169 231 IPR036638 GO:0046983
Lan12g1103 377 Pfam Helix-loop-helix DNA-binding domain 179 224 IPR011598 GO:0046983
Lan12g1103 377 MobiDBLite consensus disorder prediction 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1103 Lan-Chr12 17502583 17505465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1103 157 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 65.254 7.15e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan12g1103 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1103 - - qsu:111987215 427.172