Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1101 ATGGGTGACAAAGGAGGCACTGAGGCTCAAATTCAATCTACGTTGGTCCATGGAAAATACGAGCTAGGTCGGCTTCTAGGGCATGGAACCTTTGCTAAGGTGTACCATGCCAGGAACATTGAAACTGGAAAGAACGTAGCCATGAAGGTGGTGGGGAAAGAGAAAGTGATTAAAGTTGGAATGACGGAGCAGATCAAGAGAGAGATCTCAGTTATGAAGATGGTGAAGCATCCAAATATTGTTCAATTACACGAAGTTATGGCTAGCAAATCCAAGATCTATATTGCTATGGAGCTAGTTCGAGGTGGGGAGCTATTTAACAAGATCGTTAAAGGACGGTTGAAAGAAGATGTGGCTAGATTTTATTTTCAACAATTGATCTCCGCCATTGATTTCTGCCACAGCCGCGGTGTTTACCACCGTGACCTCAAGCCGGAGAATCTGCTCCTTGACGAAGATGGGAATCTCAAAGTCTCTGATTTTGGACTCAGTACGTTCTCGGAGGAGCACTTGAATCAAGATGGGTTGTTGCACACCACATGCGGCACTCCGGCGTACGTTTCGCCGGAGATTATTGCGAAGAAAGGCTACGACGGTGCTAAAGCGGATCTGTGGTCTTGTGGGGTTATACTCTACGTGCTTCTCGCTGGGTTTTTACCCTTTCAAGATGAGAATTTGATTGTCATGTATAAGAAGATTTACAAGGGTGATTTCAGGTGTCCACCTTGGTTCTCAATGGAAGCACGAAAACTCATCACTAAGCTTCTTGACCCGAACCCTAGTACCCGAATTACAATATCCAAGATCATGGACTCCGCTTGGTTTAAAAAACCGGTGCCCAAGAGCTTGTTGAGAAGCAAGAAAGAGGAGAATGAGTTGTTTGATTTGGAGGATAAGTGTGAGATGTCTGAGACTATGAATGCGTTTCATATTATTTCTCTTTCTGAAGGATTTGATTTGTCACCTTTGTTCGAGGAGAAGAAGAGAGAGGAGAGGGAGGAGATGAGGTTCGCGACGGCGGGGACACCGAGCAGCGTGATATCAAGGCTGGAGGAGGTGGCGAAGGCGGTGAAGTTCGACGTGAAGAGCACTGATACAAAGGTGAGGCTTCAGGGGCAGCACCGTGGGAGAAAGGGAAAATTGTCTATTGCGGCGGATATATACGCCGTAACGCAGTCGTTTTTGGTGGTTGAGGTTAAGAAAGATAAAGGTGATACTTTGGAGTACATTCAGTTCTGTAGCAATGAGCTTCGTCCTGCATTGAAAGACATTTTATGGAATTCTCCACCTGAGAACTCTACACCAGTTTGA 1311 0.4569 MGDKGGTEAQIQSTLVHGKYELGRLLGHGTFAKVYHARNIETGKNVAMKVVGKEKVIKVGMTEQIKREISVMKMVKHPNIVQLHEVMASKSKIYIAMELVRGGELFNKIVKGRLKEDVARFYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVSDFGLSTFSEEHLNQDGLLHTTCGTPAYVSPEIIAKKGYDGAKADLWSCGVILYVLLAGFLPFQDENLIVMYKKIYKGDFRCPPWFSMEARKLITKLLDPNPSTRITISKIMDSAWFKKPVPKSLLRSKKEENELFDLEDKCEMSETMNAFHIISLSEGFDLSPLFEEKKREEREEMRFATAGTPSSVISRLEEVAKAVKFDVKSTDTKVRLQGQHRGRKGKLSIAADIYAVTQSFLVVEVKKDKGDTLEYIQFCSNELRPALKDILWNSPPENSTPV* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1101 436 PANTHER - 12 434 - -
Lan12g1101 436 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Lan12g1101 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Lan12g1101 436 Gene3D Phosphorylase Kinase; domain 1 16 101 - -
Lan12g1101 436 CDD STKc_SnRK3 19 274 - -
Lan12g1101 436 Pfam NAF domain 304 362 IPR004041 GO:0007165
Lan12g1101 436 Gene3D Transferase(Phosphotransferase) domain 1 102 303 - -
Lan12g1101 436 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1101 436 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 12 434 - -
Lan12g1101 436 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1101 436 CDD CIPK_C 307 422 - -
Lan12g1101 436 SUPERFAMILY Protein kinase-like (PK-like) 16 288 IPR011009 -
Lan12g1101 436 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Lan12g1101 436 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1101 436 Gene3D Kinase associated domain 1, KA1 304 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1101 Lan-Chr12 17494849 17496599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1101 4 430 CBL-interacting serine-threonine protein kinases AT4G30960 71.889 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lan12g1101 Pkinase 7.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1101 - K07198 var:108321114 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1101 12 17494849 17496599 Lan1g1174 1 21729384 21731162 LSH