Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1092 ATGCAGCAAGGTGATCAAACATTTATTAGCTTGAGGCCTGGCGGTGGTCGTGGAGGTGCTTCCGGCGGTGCTACCAGATTCCTCGCTCCTCGATTCGATTCCTCTTCCTCTTCTTCTTCTTCTTCAATCCCTTCTTTCGGTTCCTTTTCCTCTGATTCTCGACCACATTCCACTGCTCCTTCTTCATTCTCCATCAAGGCAGGAGATTCACGGTTTGAGGGCCGTGAGCGTGTGCGATATACTAGAGACCAACTTCTACATCTTCGAGAGATTGTTGAGATCCCTGATGATGTTTTAAAGATCAAACAAGGTATTGAGGCTGAGCTTTTTGGTGAAGATCAAAGTTGGGGTCGCTCAGAAAACAATCCTCCAAATCCATCTCAAAATCGTTATACTGAGCCAGATAAACGTGACTGGCGTGGCCGATCTGCACAACTTCCTGCTAATGCAGATGAGAGGTCTTGGGGTAATCTCAAGGAGAATAGAGACTTTGGCAATAATAATCATCAAGACCAATTGAATTCTCAGTTTGGAAGGGCACAATTCTTTTCTAACCAGGGGGGAGGACCTACTCCTACTCTAGTCAAGGCTGAGGTGCCATGGTCAGCTAGAAAGGGAACTCTCTCTGACAAAGATCGTGTTTTAAAGACAGTTAAAGGAATACTAAATAAGTTGACTCCTGAGAAATTTGATCTCCTGAAGGGTCAGTTGATCGATTCTGGCATTACATCAGCCGACATATTAAAGGGTGTCATTTCTCTTATTTTTGACAAGGCAGTGCTAGAGCCAACATTTTGCCCCATGTATTCTCTGTTATGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGATGAACCTGGTGGGAAAGAAATCACTTTTAAGAGAATACTCTTGAATATCTGCCAGGAGGCCTTTGAAGGTGCAGATAATTTGAGGGAAGAACTGAGGCAGATGACTGCCCCTGAGCAGGAGTTGGAGCGACGAGACAAGGAAAGACTTGTCAAGATTCGTACCCTTGGAAACATCCGTTTGATTGGTGAGCTGTTGAAGCAAAAAATGGTTCCTGAAAGAATTGTCCATCACATTGCTCAGGAGCTTTTAGGACCTCCTGACAGCAATGTTTGTCCAGCTGAGGAAAATGTTGAAGCTATATGTCAATTTTTCACCACTATTGGTAAGCAGCTTGATGAAAGCCCAAAATCACGTCGTATAAATGATATGTACTTTGGTCGGTTGAAAGAATTGGGCACACATCCCCAACTTGTACCACGGCTGAGATTCATGGTTCGTGATGTTATAGACCTGCGTGCTAATAACTGGATTCCAAGACGAGAAGAGGTGAGAGCCAAAACCATCACTGAAATTCATTCCGAGGCAGAAAAAAATCTTGGATTGCGTCCAGGTGCCACTGCAAATATGAGAAATGCCCGTGTAGCTTCCAGTGTTCAAGGAAATACCAGCCTCGGGGGCTTCCCCATTTCTCGGCCTGGTACAGGGGGTTTGATGCCTGGGATGCCAGGGAGGGGGATGCCTGGACTTGATAATGACAACTGGGAGATACCTAGGACTAAATCAATATCTAGAGGAGACATGTCTGGCACACAAACTGCTGGGCGCGGCCAGCCTCCTTTCCTCTCCAAGCCATCAGCTACCGTGAACTCAAAGTTTCTTCCTCAAGGAAGTGGTGGTCTTAGTAGTGGGAGAAATAGTGCCTTAGTACATGGAGGTGGAGTAGCTCCTTCTGCTTATCACTCAAACTTTGTTGTAGCTACTGAGCCTGCGCCTCAAATCCCTTCTTCTGTTAAACCCGTTGCTGCTGTGCCCACTGAGGTGTCTAAGGCTCCTGCTGCAAAATTGAATAGTGATGTTCTTCGCAAGAAAACTGTTTCTCTTCTGGAAGAATATTTCAGTGTCCGGCTTCTAGATGAGGCGTTACAGTGTGTGGAGGAACTAAAATCTCCAGCTTACTATCCTGAGCTTGTGAAGGAAGCCATTTCCCTTGCACTAGATAAAAGTCCGCCATGTGTTGAGCCTGTCGCCAATCTTGTTGAGTATCTGTTTATCAAGAAGATTATTTCAGCAAGAGACATAGGCAATGGCTGCTTGTTGTTTGGTTCTATGCTGGATGATATTGGCATAGATTTACCTAAGGCACCATATAATTTTGGTGAGATAATAGGGAAACTAGTTTTAGCTGGGAGTTTGGATTTTAAGGTGGTAAGAGATATCCTTAAGACGGTGGAGGATGACCGGTTCCAGAAAGCAATATTTGATGCTGCAGTACAGGTAATTAACACTGCATCTGGGCAATCCGTGTTAGATACACAAGCATCTGATATTGAAGCCTGTCGGAGTGTGTTCAACTGA 2373 0.4496 MQQGDQTFISLRPGGGRGGASGGATRFLAPRFDSSSSSSSSSIPSFGSFSSDSRPHSTAPSSFSIKAGDSRFEGRERVRYTRDQLLHLREIVEIPDDVLKIKQGIEAELFGEDQSWGRSENNPPNPSQNRYTEPDKRDWRGRSAQLPANADERSWGNLKENRDFGNNNHQDQLNSQFGRAQFFSNQGGGPTPTLVKAEVPWSARKGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYSLLCSDLNEKLPPFPSDEPGGKEITFKRILLNICQEAFEGADNLREELRQMTAPEQELERRDKERLVKIRTLGNIRLIGELLKQKMVPERIVHHIAQELLGPPDSNVCPAEENVEAICQFFTTIGKQLDESPKSRRINDMYFGRLKELGTHPQLVPRLRFMVRDVIDLRANNWIPRREEVRAKTITEIHSEAEKNLGLRPGATANMRNARVASSVQGNTSLGGFPISRPGTGGLMPGMPGRGMPGLDNDNWEIPRTKSISRGDMSGTQTAGRGQPPFLSKPSATVNSKFLPQGSGGLSSGRNSALVHGGGVAPSAYHSNFVVATEPAPQIPSSVKPVAAVPTEVSKAPAAKLNSDVLRKKTVSLLEEYFSVRLLDEALQCVEELKSPAYYPELVKEAISLALDKSPPCVEPVANLVEYLFIKKIISARDIGNGCLLFGSMLDDIGIDLPKAPYNFGEIIGKLVLAGSLDFKVVRDILKTVEDDRFQKAIFDAAVQVINTASGQSVLDTQASDIEACRSVFN* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1092 790 Pfam MA3 domain 626 738 IPR003891 -
Lan12g1092 790 SUPERFAMILY ARM repeat 621 768 IPR016024 -
Lan12g1092 790 SMART ma3_7 626 738 IPR003891 -
Lan12g1092 790 MobiDBLite consensus disorder prediction 526 552 - -
Lan12g1092 790 MobiDBLite consensus disorder prediction 529 552 - -
Lan12g1092 790 Pfam MIF4G domain 215 441 IPR003890 GO:0003723|GO:0005515
Lan12g1092 790 ProSiteProfiles MI domain profile. 625 747 IPR003891 -
Lan12g1092 790 MobiDBLite consensus disorder prediction 30 65 - -
Lan12g1092 790 Coils Coil 310 330 - -
Lan12g1092 790 SMART if4_15 215 441 IPR003890 GO:0003723|GO:0005515
Lan12g1092 790 MobiDBLite consensus disorder prediction 112 171 - -
Lan12g1092 790 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 789 IPR045208 GO:0003743
Lan12g1092 790 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 789 - -
Lan12g1092 790 Gene3D - 206 442 - -
Lan12g1092 790 MobiDBLite consensus disorder prediction 115 130 - -
Lan12g1092 790 SUPERFAMILY ARM repeat 208 443 IPR016024 -
Lan12g1092 790 MobiDBLite consensus disorder prediction 1 66 - -
Lan12g1092 790 Gene3D - 619 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1092 Lan-Chr12 17438866 17444054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1092 1 788 Eukaryotic Initiation Factors Gene Family AT5G57870 62.547 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1092 K03260 - gmx:100781275 1234.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1092 12 17438866 17444054 Lan1g1184 1 21795432 21801230 LSH
Lan12g1092 12 17438866 17444054 Lan1g0316 1 2299173 2315546 LSH