Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1076 ATGACTACAAGCTTTCTACATGAGAAAGGTGATGCCTTTCTGCCTCAATCAGAACAATCATCTTATTTTCTTTCTCAGCCAAACCCACCTTCCCCGCCAAATCTTCAATCTAATACTTTCATTTTCAATGATAAGGTTCTAAAGGTTAGTCCAAGTGTACTACTCATTATTATAATTCTAGCTATTGTATTCTTCATTTCTGGTTTGCTTCACCTCCTTGTTAGATTCCTATGGAGACCTCAAAGTAGAGACCATGATGATTTGGATAATGTTACTGCACTTCAAGGTCAATTGCAGCAACTTTTCCATCTCCATGATGCTGGTGTTGACCAGTCTTTTATTGATACTCTCCCTGTATTTAATTACAAAGCCATTATAGGATTAAAGAACCCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTTGAGCCTGAGGATAAGCTTAGATTGCTTCCAAAATGTAGCCATGCCTTTCACATGGAGTGTATTGATACATGGCTCTTGTCACACTCTACTTGTCCTCTTTGTAGAGCTACCTTGCTCCCCGAGTTTTCCACAAACAATACTCGTTCCCCTTTTGTTTTTGTTCTAGAATCTGGGAGTGAGAGTTCAAGAGAGATTGTTTCAGAAATAGAGGGTATTGCTTCTGGTGCTGTTGTTGGAAGAACTAGTTCAGTTATAACAACAAAATCCCGTCTTGGTGGTAGTGATTTTGGATCAACTAGAATTGATTTACCAAGGAAATCAGGTGATTTGATTTTAAATGAGAATCCTATACCTGATCAAACTGTGGTCGGTGATGGTGTGGAAAAAGTTGTTACTGTGAAGCTAGGAAAGTTTAGGAATGTGGATGGTGATGTTGTAGTTGGTGGTGAAGGAAGTAGTAGCACCAACAATGTAGATGATAGAAGATGTTTTTCTATGGGGTCATTTGCTTATGTTATGGACGAGAGTGCTTCACTTCAGGTACCAATAAGAACACCAATGAAGAAGCAACCAAGTAAGAAAAAGTCTGTGTTGCCTTTGACACCAGGACACAGGCCTGCAATGTCTGAATGTAACTTTGAATCTAGAAGAGATTTCAAATTTGCAGGCTTTCATAATGTAACTAATTATAGTAATAGATCAGTTGAGAGTGTTGGTTGTAGTGGTAGTGGAGGTGCTGCTATTGGAAGGAACAGAAAAGAGAGTTTTTCTATATCAAAGATTTGGCTGAGGGGGAAGAAGGAGAAGCCTAATGCTTTGGCTGATTCAACCAGAAGGGCTGTTTCGTTCCGGTACCCGGTTGTTGGTAGTGATGATTTGAAGGCTAAGAATGGGAAATTTGACACAAGGAGTACTATTTCGATGGATATTGGGAAATGGGAGAATGGTGGAAGCGAGTTCGGGTATGATGAGGAAAATCAGAGCTGCTATAGTATGGATTCTCAAGCTACAGCAACTTCTTTTGCTAGAAGGACTTTGCTTTGGCTCACTGGAAGACAGAATAAGGTTGTTCACTCATCTTCTGCTTCCAATCTCTAG 1521 0.3971 MTTSFLHEKGDAFLPQSEQSSYFLSQPNPPSPPNLQSNTFIFNDKVLKVSPSVLLIIIILAIVFFISGLLHLLVRFLWRPQSRDHDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFNYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRATLLPEFSTNNTRSPFVFVLESGSESSREIVSEIEGIASGAVVGRTSSVITTKSRLGGSDFGSTRIDLPRKSGDLILNENPIPDQTVVGDGVEKVVTVKLGKFRNVDGDVVVGGEGSSSTNNVDDRRCFSMGSFAYVMDESASLQVPIRTPMKKQPSKKKSVLPLTPGHRPAMSECNFESRRDFKFAGFHNVTNYSNRSVESVGCSGSGGAAIGRNRKESFSISKIWLRGKKEKPNALADSTRRAVSFRYPVVGSDDLKAKNGKFDTRSTISMDIGKWENGGSEFGYDEENQSCYSMDSQATATSFARRTLLWLTGRQNKVVHSSSASNL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1076 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 181 IPR013083 -
Lan12g1076 506 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 14 416 - -
Lan12g1076 506 Pfam Ring finger domain 133 176 IPR001841 -
Lan12g1076 506 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 14 416 - -
Lan12g1076 506 CDD RING-H2_PA-TM-RING 133 176 - -
Lan12g1076 506 SUPERFAMILY RING/U-box 113 189 - -
Lan12g1076 506 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Lan12g1076 506 SMART ring_2 134 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1076 Lan-Chr12 17306309 17308402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1076 48 504 C3H Transcription Factor Family AT2G18650 46.414 5.10e-99 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1076 - - lja:Lj4g3v2023880.1 646.736