Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1066 ATGGGAATTGAGAGGGGGGGTCTTATTTTGAAGGGGTTGAGGAGTGGCTGGAGTGTGCCGCCGAAGCTATGTGACTCTTGCAAGTTAGCTTCGGCGACACTTTTCTGCCACCCCGATTCCATGTTTCTCTGCATCCTCTGCGATTCCAAAATTCACTCATTCAACAAACATGGTTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTATGCGAGCAAGCACCTGCAGCTGTCACGTGCAAAGCAGACGCTGCTGCACTATGTGTCACGTGCGATTCAGATATCCACTCCGCTAACCCACTCGCGCAGCGCCACGACCGTGTCCCCGTCGAGCCCTTCTACGACTCTGCTGAGTTCATAGTCAAAGCCTCCGCCGCTAATTTCGGCTTTGTGGTCCCCACCGACGACGGAATTACTTCAAACGGGCTCAATCAAGATGAGCCATGGCTCATTCCGAACCCTAATTACGGGTCGAAACTCATGGATGCACCTGATATCAAGTCCAGGGAGATGTTCTTCTCTGACATGGATCCCTTTCTTGATTTCGATAACTCAACGAATTTCATCCATAACACTGGAAACGACAGCGTTGTGCCTGTTCAAACCAAAACCGCTCCTATCATGATTCACCATAGCTCAGAAGCTTGCTTCGACAACGAATTTTCTAGATCGAAACTCTCCTCGTTCAACTACCCATCCCAGTCTATTAGCCAAAGCGTTTCTTCGTCTGATGTTGGAGTTGTGCCAGATGCGAACACGGTTTCAGAGATGTCGTACTCTTTCGTCAGGAACAGTTCAGATTCAAATGCAATGGATCGTGAAGCGAGGGTGATGAGGTACAGAGAGAAGAGAAAGAATCGAAAGTTTGAGAAAACTATTCGTTACGCTTCACGAAAAGCTTACGCTGAAACCCGGCCCAGGATTAAAGGCCGGTTCGCTAAACGAACCGAAATTGAACCGGATATGGACCGTCTTTATAATCCCTCTAGTGCTGTTGCTTCTGTTCCTGCAACTATCATGCTGGACACACCGTACGGCGTCGTACCGTCCTTCTAA 1053 0.4948 MGIERGGLILKGLRSGWSVPPKLCDSCKLASATLFCHPDSMFLCILCDSKIHSFNKHGSRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLAQRHDRVPVEPFYDSAEFIVKASAANFGFVVPTDDGITSNGLNQDEPWLIPNPNYGSKLMDAPDIKSREMFFSDMDPFLDFDNSTNFIHNTGNDSVVPVQTKTAPIMIHHSSEACFDNEFSRSKLSSFNYPSQSISQSVSSSDVGVVPDANTVSEMSYSFVRNSSDSNAMDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIEPDMDRLYNPSSAVASVPATIMLDTPYGVVPSF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1066 350 Pfam CCT motif 272 314 IPR010402 GO:0005515
Lan12g1066 350 ProSiteProfiles CCT domain profile. 272 314 IPR010402 GO:0005515
Lan12g1066 350 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 11 350 - -
Lan12g1066 350 CDD Bbox1_BBX-like 67 109 - -
Lan12g1066 350 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Lan12g1066 350 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Lan12g1066 350 CDD Bbox1_BBX-like 23 66 - -
Lan12g1066 350 SMART bboxneu5 67 109 IPR000315 GO:0008270
Lan12g1066 350 SMART bboxneu5 19 66 IPR000315 GO:0008270
Lan12g1066 350 Pfam B-box zinc finger 21 62 IPR000315 GO:0008270
Lan12g1066 350 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
Lan12g1066 350 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 11 350 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1066 Lan-Chr12 17211350 17213034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1066 10 350 C2C2-CO-like Transcription Factor Family AT5G57660 53.186 6.85e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan12g1066 zf-B_box 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1066 - - gmx:100805693 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1066 12 17211350 17213034 Lan1g0351 1 2647601 2649335 LSH