Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1061 ATGGGTAGAGCTCCATGCTGTGACAAGGCCAATGTTAAGAAAGGACCTTGGTCTCCTGAAGAGGATGATGCACTCAAAGAATACATTGAAAAAAATGGAACCGGTGGAAATTGGATTGCTCTTCCTCAGAAAATTGGGATCAAGAGATGTGGAAAGAGTTGTAGGCTTAGGTGGTTGAATTACTTGAGACCTAATATCAAGCATGGTGGATTTACTGAAGAAGAAGACAACATCATATGCAATCTTTACATTAGCATTGGAAGCAGGTGGTCCATTATTGCAGCACAATTACCTGGAAGGACAGATAATGATATTAAGAACTATTGGAACACAAGATTGAAGAAGAAACTGCTTGGGAGGCGCAAACAATCTAACTTCAACACAAAAGAAACAAACGGAATAGAAGAGAATTCATCCAGTAATTCCCTAAGCAATTCTGCTCTTGAAAGGCTTCAACTGCATATGCAACTCCAAAGCCTTCAAAACCCTTTCTCTTTCTACAGTAACACTTCACTGTGGCCTAAGTTACATCCTTCCCAAGAAAAGGTGATTCAGCAATCTTTGAATGACAGCTCTAACTCTAACCCTTTGATGCAAGGACAAAAAGATGAGTTCTATAAACCAATTACTGCTATTGGTGATTTGCTTCAACAAAATGGTGCAAATATCAATGCTCCAAAGGTAATTGGTCATTTGGAGAATACTTTGAATAATAGTTCAGTTCCCTTCATTGCTAATTCTGGGAATAATACTCCAATGTACTCATCAAGTATTGTTGAGCAAACGACTAACATGGGACTTCAGCAAGCTTGTACACTGCAAATTACTGAACTTGATGACATTCTCAACAATAGAACTACAATGGGTAGTTACTTGCCACAGGAAGAACAGAATATGGCTGAATTTGATTGTTTCAGAGAGATGAATAATGGTTCAAAGGATAATAGCAGCTTGATTTGGTGGTCCAATGTTTCTGATGCCAAGTCAGCAACCACGAGCTCTTGGGATTCATCAACTACTCCAACTCTTATGCCAGAAGGGATGTTCCATGATTATGAACTAGGTTACAGTTTGTAG 1077 0.389 MGRAPCCDKANVKKGPWSPEEDDALKEYIEKNGTGGNWIALPQKIGIKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICNLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNFNTKETNGIEENSSSNSLSNSALERLQLHMQLQSLQNPFSFYSNTSLWPKLHPSQEKVIQQSLNDSSNSNPLMQGQKDEFYKPITAIGDLLQQNGANINAPKVIGHLENTLNNSSVPFIANSGNNTPMYSSSIVEQTTNMGLQQACTLQITELDDILNNRTTMGSYLPQEEQNMAEFDCFREMNNGSKDNSSLIWWSNVSDAKSATTSSWDSSTTPTLMPEGMFHDYELGYSL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1061 358 Gene3D - 70 143 - -
Lan12g1061 358 CDD SANT 71 113 IPR001005 -
Lan12g1061 358 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan12g1061 358 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lan12g1061 358 MobiDBLite consensus disorder prediction 120 141 - -
Lan12g1061 358 CDD SANT 16 62 IPR001005 -
Lan12g1061 358 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan12g1061 358 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lan12g1061 358 MobiDBLite consensus disorder prediction 124 141 - -
Lan12g1061 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lan12g1061 358 PANTHER OS09G0431300 PROTEIN 1 314 - -
Lan12g1061 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan12g1061 358 Gene3D - 7 68 - -
Lan12g1061 358 SMART sant 13 64 IPR001005 -
Lan12g1061 358 SMART sant 67 115 IPR001005 -
Lan12g1061 358 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lan12g1061 358 PANTHER OS09G0431300 PROTEIN 1 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1061 Lan-Chr12 17189608 17191352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1061 1 209 MYB Transcription Factor Family AT5G57620 70.968 2.73e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan12g1061 Myb_DNA-binding 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1061 K09422 - gmx:778083 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1061 12 17189608 17191352 Lan1g0355 1 2677985 2680226 LSH