Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1060 ATGTGTAATAATAAAGGGTTTCAATGTTTAAGCCAGTCTGATAATAATCTATTTGATAATCTTCACCATCATACACAACAACATCACTATTTGATGGATAGCCCCACCGCGGTTCGATCTCCGGCCACTGGTGGTTCTGATCCCGGTTCCAACGACGAAACCCGGCGTGTTAAATTCCTGTGTAGCTTTCTAGGGAGCATAATACCACGACCGCAGGATGGTAGATTACGTTATGTAGGTGGAGAGACACGTATTGTGAGTGTTCCACATGATATTAGCTATGAGGAATTGATGATGAAGATGAGAGAGTTGTATGATGGTGCTGCTGTGTTGAAGTACCAGCAACCTGATGAGGATCTTGATGCCCTTGTCTCTGTTGTCAATGATGATGATGTGGTTAACATGATGGAAGAGTATGATAAATTAGGTTCAGGTGATGGATTCACTAGGCTCAGGATTTTCTTGTTTTCGCAATTGGAGCAGGATGGTTCCTCACACTTCAATGATGGGGATGATAATGAGAGAAGGTATGTTGATGCATTGAATATTTTAAATGATGTTTCTGATTTTAGGATGTTGAATCAAATGGAGTTTCCTATTATGAACCCTGTTGAGGATATCCATATGCCTGATCAATTATATAATCCAATTAGTGTGGAAGGTGGGATTTATAGCCAGAGAAGTGGGGAACTATCTATGCCGCCACAGTATAATTTGCATCATATTGCCATTCAGCACCAGCAGCAACCTATGAGTCAGAGGTTTAGTGAAATGGATTCTCCATGGAGTCCTGCTTTTTACTCTCCTAGGCATCATGCTCACCATGACTCAAGATCAGTGGTAGAATTTCCATCTTCTCCTTCAAGTGCGAGGTACCGAGGGCCGTTTCCCGAATTACCGGATTATGGAGTGCCCGAAGAGTATGCTCGACATCATGTGTATGACAATCAACCGCAATATCCTGAAAATGTTGTGTGGATGCCAACAGCACCACCACCACATTGTGAGAAGTCAGGGTTTCCAGGAAACAGTTTTCATGGCCCTAATGTTGTAGATGGGAACAGTATATGTGACCACTGTCGCATGAGTTTTCCGAGAGGTCAACCATCTATGGAGCTTCCTAATAATATCAGTAATGGACTCCCACCGGTTGTTGGTAATTCATGTGCAGAATGCCCCTCAACTACGGTGAATGCCATCTATCCGAATGAGCCTAGTAATGATCTTGTTATAAACTTGTCTAGGCATGGTAGTGTGAATGATGGACATACTTACTTGTCTAGGCATGGTAGTGTGAATGACAGTCATACTCTGTCTGCCAACTATGTTCAGCAACCACCTGGACCTGAATTGGGGGCTGAGCTATTTCCTGACCAAACCATGCCTGCTATAGCACATATTCAAATTCCTGCCCTTGAAGAGCACAGTATCCGGTTTGGAAATCCTCCTTCTCCTTATGCAGTAGATAGTCATTTTGCTGTGCCCCGTGGACATGTGCCCGGGCATGCTTTCTGGAGAAATGCTCCCACTCCAGTTCATATTGGACCATCTTATGAAGTATCTACTTCATCTCAGCAGGTGAATGGTATGATAAATGCTGGATTAGTCAGGGTAGAGAGCAACCCAGGATTTTTTGTTGGGCCAGATAGTCAAAACCCTATTCCTTTGGTTGATTCCCCACTGATGTTGTCAGGACATGATGGGTTAGCTATCTCAGAACATCCTTACACACAGACTCTGAAAATGAGTTCAAATGCCATTGATCAGGAAAATCAACATCCGATAACTGTAGATGCAATCTACCCATCACAGGACATAAATGCTAGCACTTTCTTGGAACCTATGCAGCTGCCAAAATCATCCGTTAATATGGTTCACGGAAATGTTGAAAACTATAATGCTCAGCCGCATGTTATATCTTTTTCAGAGCAAAATAAAATCACAGAAAATGTATTCAAAGCTGTCAGTCAACCTGCAGCAGAGTGTGGAAATGTTGAGAAACTGGCAGACAAAGACCCTTCTGCTCCAGAAGATTCTAAGCATTTGGTTGATCAATTCAGTTTCTTGCCTGAGTTGATTGCTTCTGTAAAAAAGGCTGCATTAGAAGGTGCCGAGGAGGTCAGAGCTAAAGCTGAAGAGCATGAAAATTCTCAGATGCACAATTCAAAACCCAAAGAAGAAACAGCGAATGAGGTAGAACTAGTGAATGCTCATGATGATTTAGAATCGGAACCTGAAAATGACCATGTGGATACTTCTAAAATTGAGCCTACAAAGGCCGAGGAAGAAGCAATTGCTAGGGGGTTGCAGACAATTAAAAATGATGATCTGGAGGAGATCCGCGAGCTAGGTTCTGGAACTTATGGGGCTGTCTATCATGGGAAATGGAAGGGTTCTGATGTTGCCATTAAGAGAATAAAAGCTAGCTGTTTTGCTGGAAGACCATCTGAAAGAGAGAGATTGATTGCAGATTTTTGGAAAGAGGCATTGCTGTTGAGTTCATTACATCATCCAAATGTTGTCTCCTTCTACGGTATTGTTCGTGATGGCCCTGATGGTTCTTTAGCAACTGTGACAGAGTTCATGGTTAATGGATCTTTAAAACAGTTCTTGCATAAGAAAGATAGGACAATAGATCGTCGTAAGAGGCTCATAATAGCTATGGATGCTGCATTTGGGATGGAGTATTTGCATGCCAAAAACATTGTGCATTTTGATTTGAAATGCGAAAATCTATTGGTCAATATGAGAGATCCGCAACGGCCTGTCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTCAAACAGCACACTCTAGTGTCAGGAGGGGTACGAGGAACTTTGCCATGGATGGCACCTGAACTTCTTAGCGGGAAAAGCACTATGGTGTCAGAGAAGATTGATGTTTACTCATTCGGGATAGTCATGTGGGAAGTACTCACAGGGGATGAACCCTATGCTAATATGCATTGTGCATCAATAATAGGAGGAATTGTGAACGGCAGTTTACGCCCTCAAACCCCAACATGGTGTGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGTTGGGCTTCAGATCCTGCAGAAAGGCCATCATTTTCAGAAATTTCTAAGAAGCTGAGGACTATGGCTGCTGCAATGAATGTGAAATAG 3153 0.4266 MCNNKGFQCLSQSDNNLFDNLHHHTQQHHYLMDSPTAVRSPATGGSDPGSNDETRRVKFLCSFLGSIIPRPQDGRLRYVGGETRIVSVPHDISYEELMMKMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQLEQDGSSHFNDGDDNERRYVDALNILNDVSDFRMLNQMEFPIMNPVEDIHMPDQLYNPISVEGGIYSQRSGELSMPPQYNLHHIAIQHQQQPMSQRFSEMDSPWSPAFYSPRHHAHHDSRSVVEFPSSPSSARYRGPFPELPDYGVPEEYARHHVYDNQPQYPENVVWMPTAPPPHCEKSGFPGNSFHGPNVVDGNSICDHCRMSFPRGQPSMELPNNISNGLPPVVGNSCAECPSTTVNAIYPNEPSNDLVINLSRHGSVNDGHTYLSRHGSVNDSHTLSANYVQQPPGPELGAELFPDQTMPAIAHIQIPALEEHSIRFGNPPSPYAVDSHFAVPRGHVPGHAFWRNAPTPVHIGPSYEVSTSSQQVNGMINAGLVRVESNPGFFVGPDSQNPIPLVDSPLMLSGHDGLAISEHPYTQTLKMSSNAIDQENQHPITVDAIYPSQDINASTFLEPMQLPKSSVNMVHGNVENYNAQPHVISFSEQNKITENVFKAVSQPAAECGNVEKLADKDPSAPEDSKHLVDQFSFLPELIASVKKAALEGAEEVRAKAEEHENSQMHNSKPKEETANEVELVNAHDDLESEPENDHVDTSKIEPTKAEEEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERERLIADFWKEALLLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHAKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSTMVSEKIDVYSFGIVMWEVLTGDEPYANMHCASIIGGIVNGSLRPQTPTWCDPEWKSLMESCWASDPAERPSFSEISKKLRTMAAAMNVK* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1060 1050 Coils Coil 697 717 - -
Lan12g1060 1050 MobiDBLite consensus disorder prediction 706 729 - -
Lan12g1060 1050 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 627 1050 - -
Lan12g1060 1050 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 380 626 - -
Lan12g1060 1050 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 275 - -
Lan12g1060 1050 ProSiteProfiles Protein kinase domain profile. 777 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1060 1050 Gene3D Phosphorylase Kinase; domain 1 763 863 - -
Lan12g1060 1050 ProSitePatterns Protein kinases ATP-binding region signature. 783 804 IPR017441 GO:0005524
Lan12g1060 1050 SMART PB1_new 71 156 IPR000270 GO:0005515
Lan12g1060 1050 SUPERFAMILY Protein kinase-like (PK-like) 769 1038 IPR011009 -
Lan12g1060 1050 SMART serkin_6 777 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1060 1050 CDD STKc_MAP3K-like 783 1040 - -
Lan12g1060 1050 Pfam PB1 domain 72 157 IPR000270 GO:0005515
Lan12g1060 1050 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672|GO:0006468
Lan12g1060 1050 PANTHER - 627 1050 - -
Lan12g1060 1050 PANTHER - 380 626 - -
Lan12g1060 1050 PANTHER - 33 275 - -
Lan12g1060 1050 Gene3D - 77 159 - -
Lan12g1060 1050 PRINTS Tyrosine kinase catalytic domain signature 859 872 IPR001245 GO:0004672|GO:0006468
Lan12g1060 1050 PRINTS Tyrosine kinase catalytic domain signature 896 914 IPR001245 GO:0004672|GO:0006468
Lan12g1060 1050 PRINTS Tyrosine kinase catalytic domain signature 967 989 IPR001245 GO:0004672|GO:0006468
Lan12g1060 1050 PRINTS Tyrosine kinase catalytic domain signature 1011 1033 IPR001245 GO:0004672|GO:0006468
Lan12g1060 1050 Gene3D Transferase(Phosphotransferase) domain 1 864 1050 - -
Lan12g1060 1050 Pfam Protein tyrosine and serine/threonine kinase 778 1040 IPR001245 GO:0004672|GO:0006468
Lan12g1060 1050 CDD PB1_UP2 60 156 - -
Lan12g1060 1050 SUPERFAMILY CAD & PB1 domains 73 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1060 Lan-Chr12 17178284 17184663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1060 51 1050 MAP Kinase Kinase Kinase AT5G57610 54.906 0.0 1008
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Lan12g1060 PK_Tyr_Ser-Thr 3.4e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1060 - - lang:109355391 1872.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1060 12 17178284 17184663 Lan1g1211 1 22017740 22024016 LSH
Lan12g1060 12 17178284 17184663 Lan1g0356 1 2688470 2697868 LSH
Lan12g1060 12 17178284 17184663 Lan14g0032 14 511699 519332 PCT
Lan14g0032 14 511699 519332 Lan12g1060 12 17178284 17184663 PCT