Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1049 ATGAATTTCCATCATCCTAATACTTCTCTTCACCTAAGGGAACCAGATGAGAACAATTCACTAAATCTAGATCTTCTCCTTGACCCTTCTTCCTCTTCTTCATCTTCACCTCCTATTACTTCAATGGAACCTAGGATATTCTCATGCAACTATTGTCAGAGAAAGTTTTATAGTTCACAAGCTTTGGGAGGCCACCAAAATGCTCATAAGCTGGAAAGGACTCTTGCCAAGAAGAGTAGGGAGCTGAGTTCAGCCATGCAAGCTTATGGAGAAGGAGGACAAGAAAGAAGACCATATTTCAGAGCTAATTCACACCAACAACACCATCTTGGTCGTGCTCTTGGGGTCATGGAAAACCAAGGTACGAGGGTTGTTGCGGAAAGAAGAGAGTTTAACTATGGTTCTAAAGATGGGGTACCTTCTTGGTCACGTGGCTATACTTCTGAAAATGTTCAAGAAGATGTTGGCCAACTTGACTTGTCCTTAAGGCTTTGA 495 0.4222 MNFHHPNTSLHLREPDENNSLNLDLLLDPSSSSSSSPPITSMEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSAMQAYGEGGQERRPYFRANSHQQHHLGRALGVMENQGTRVVAERREFNYGSKDGVPSWSRGYTSENVQEDVGQLDLSLRL* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1049 164 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Lan12g1049 164 Gene3D Classic Zinc Finger 30 98 - -
Lan12g1049 164 PANTHER ZINC FINGER PROTEIN 2 19 164 - -
Lan12g1049 164 MobiDBLite consensus disorder prediction 21 40 - -
Lan12g1049 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Lan12g1049 164 Coils Coil 68 88 - -
Lan12g1049 164 SUPERFAMILY beta-beta-alpha zinc fingers 44 74 IPR036236 -
Lan12g1049 164 PANTHER ZINC FINGER PROTEIN JAGGED 19 164 IPR045320 GO:0003700
Lan12g1049 164 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1049 Lan-Chr12 17117855 17119640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1049 4 164 C2H2 Transcription Factor Family AT5G57520 46.108 2.20e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan12g1049 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1049 - - gmx:100778014 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1049 12 17117855 17119640 Lan1g1217 1 22056136 22057135 LSH
Lan12g1049 12 17117855 17119640 Lan1g0360 1 2732222 2733304 LSH