Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1048 ATGGCACCTGCACCTCTTCCTTCTCAAGAATTCATTTTCCGTTCCAAACTACCAGATATTTCCATTCCCACCCATCTTCCTTTACACTCTTACTGCTTCCAAAACCTCTCCGAATTCGAACACCGCCCATGCCTCGTCAATGCCGACACCGGCGACACCCTCACCTACGCCGAAGTTGACCTCACCTCCCGCAGAATCGCCACCGGCCTCGACAAAATCGGAATCAGTCAGGGTGACGTCATCATGATCATCCTCCGCAACTGTCCCCAGTTCGCCCTCTCCTTCTTGGGTGCCTCCCACCGTGGCTGCGCCGTCACCACCGCCAACCCCTCTTATACGCCGGCTGAGCTGGCGAAACAAGCGGAGGCCACGAAAGCGAAACTAATCATAACACACGCTGCTTACGTGGACAAAATCAAATCTTTCTGTGAAAGCAACGATGTCAAGGTGATATGCATTGATTCATCACAAGAAGAAGGTGTTTTAAACTTCACGGTGTTAACTAACGCTGACGAGAAAGAAATCCCCGACGTTAAAATAAACCCAGACGACGTCGTTGCAATCCCTTTCTCTTCAGGAACGAGCGGTTTACCTAAGGGAGTAATGTTAACACATAAAAATTTAGTCACCACGGTGGCGCAGCTTGTTGACGGTGAGAATCCACACCAATACAGTGACAGCGACGACGTGCTTCTCTGTGTGCTTCCAATGTTTCATATCTTCGCGCTTAACTCGATTTTGCTGTGTGGGATACGTTCTGGCGCAGCGGTTTTGATCGTGCCGAAATATGAGATGACTAAATTGCTGGAGTATATAGAGAAGTACAAGGTGACGGTGGCATCGTTGGTTCCGCCGATTATTATGGCGTTGGTTAAGAGTGAAGATGCGGTGAGATACGATTTGTCGAGTGTTCGGGCAGTGATAACAGGTGCGGCACCAATGGGAGTGGAGATTGGAGAAGCTGTCAAAACTAGGCTTCCAAATGCCATACTGGGACAGGGATATGGGATGACAGAGGCTGGGCCACTTTGCATAAGCTTAGCATTTGCAAAGGAGCCATTGAAGATAAAGATAGGTGCATGCGGGAGCGTTGTTAGAAATGCTGAGATAAAAATCGTGGACACAGAGACTGGTGCTTCGCTTCCCACAAACAAAACTGGTGAAATTTGCGTTAGAGGCACAAAAGTTATGAAAGGATACCTAAATGACCCAGAGGCTACAGAGAGAACTATAGACAAAGAAGGATGGCTACACACTGGTGATATTGGTTATTTTGACGATGATGAAGAGCTCTTCATCGTTGATCGATTAAAGGAACTAATCAAATACAATGGATTCCAAGTAGCTCCTGCTGAACTCGAAGCAATGTTGATTGCTCACCCAAATATTTTTGATGCTGCTGTTGTACCCTTGAAACATGAAGTTGCTGGAGAAGTTCCAGTAGCATTTGTCGTGAGATCAAATGGTTCTAAGATTACGGAAGATGAAATCAAACACTACATTTCACAACAGGTGGTATCTTACAAGAGAATCAATAGAGTTTTCTTCACAGACACTATTCCTAAAGCAGCCTCAGGCAAAATTCTGCGAAAGGAATTAAGTGCAAGGCTTAACGAAGGTCTAGTACAGGCCAATTAG 1638 0.4628 MAPAPLPSQEFIFRSKLPDISIPTHLPLHSYCFQNLSEFEHRPCLVNADTGDTLTYAEVDLTSRRIATGLDKIGISQGDVIMIILRNCPQFALSFLGASHRGCAVTTANPSYTPAELAKQAEATKAKLIITHAAYVDKIKSFCESNDVKVICIDSSQEEGVLNFTVLTNADEKEIPDVKINPDDVVAIPFSSGTSGLPKGVMLTHKNLVTTVAQLVDGENPHQYSDSDDVLLCVLPMFHIFALNSILLCGIRSGAAVLIVPKYEMTKLLEYIEKYKVTVASLVPPIIMALVKSEDAVRYDLSSVRAVITGAAPMGVEIGEAVKTRLPNAILGQGYGMTEAGPLCISLAFAKEPLKIKIGACGSVVRNAEIKIVDTETGASLPTNKTGEICVRGTKVMKGYLNDPEATERTIDKEGWLHTGDIGYFDDDEELFIVDRLKELIKYNGFQVAPAELEAMLIAHPNIFDAAVVPLKHEVAGEVPVAFVVRSNGSKITEDEIKHYISQQVVSYKRINRVFFTDTIPKAASGKILRKELSARLNEGLVQAN* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1048 545 CDD 4CL 22 533 - -
Lan12g1048 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 7 537 - -
Lan12g1048 545 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Lan12g1048 545 Gene3D - 438 541 IPR045851 -
Lan12g1048 545 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Lan12g1048 545 Gene3D - 6 437 IPR042099 -
Lan12g1048 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - -
Lan12g1048 545 Pfam AMP-binding enzyme 37 443 IPR000873 -
Lan12g1048 545 SUPERFAMILY Acetyl-CoA synthetase-like 12 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1048 Lan-Chr12 17107099 17112654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1048 8 507 Monolignol Biosynthesis Gene Families AT1G51680 62.795 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1048 K01904 - gmx:100810418 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1048 12 17107099 17112654 Lan1g0361 1 2739961 2744195 LSH