Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1041 ATGAACAGTTTTGACCCCCAAAGACAAGACTCATTGAAAAGGAGATGGCAACAGCAAATTATGGGGGTAGCTTCAAATTCTTCTTCTTTGGCTTTCTATGGTGATAATAAGAATAACTCTAGAAACAAATTCCAAAGCTTTCTAGGGGATGATGATCTAGTCTCAACAGTAATCCCAGCAGTGACAGTGGTTCTTGAAGGCCGTTCGATCTGTCAGCGCATCAACCTCCATAACCATGCTAGCTACAAAAGTCTCGCCAAGGCACTTAGACAAATGTTTGTGGAGGGTGATGAAGGAAACATGGAGAATGATGATGTTCTTGATCTGTCTAATGCCATTCCTGGTTACCTTATTGCTTATGAAGACATGGAGAACGATCTTCTTCTTGCTGGTGATCTCAGTTGGAAGGATTTTGTACGTGTGGCAAAGAGAATTCGGATACTTCCAGCCAAGGGGAACTCAAAGAAAGCTGCAACAAGTACAAGAGAAGAAGCATAA 498 0.4197 MNSFDPQRQDSLKRRWQQQIMGVASNSSSLAFYGDNKNNSRNKFQSFLGDDDLVSTVIPAVTVVLEGRSICQRINLHNHASYKSLAKALRQMFVEGDEGNMENDDVLDLSNAIPGYLIAYEDMENDLLLAGDLSWKDFVRVAKRIRILPAKGNSKKAATSTREEA* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1041 165 Gene3D - 55 162 - -
Lan12g1041 165 Pfam AUX/IAA family 55 149 IPR033389 -
Lan12g1041 165 ProSiteProfiles PB1 domain profile. 58 152 IPR000270 GO:0005515
Lan12g1041 165 PANTHER AUXIN-RESPONSIVE PROTEIN IAA33 1 157 - -
Lan12g1041 165 SUPERFAMILY CAD & PB1 domains 71 147 - -
Lan12g1041 165 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 157 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1041 Lan-Chr12 17065388 17067095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1041 62 148 B3 DNA Binding Superfamily AT1G19220 33.333 8.00e-08 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan12g1041 AUX_IAA 5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1041 - - jre:108991144 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1041 12 17065388 17067095 Lan1g0368 1 2852835 2854362 LSH