Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1036 ATGTATTCGACGAGCCAGTTCGACGGGAACGCAGCCTTCTCCGGCGGTGGTTTCATGCCGTCTCAGGCTACTCAGGCCACCGACTCTTCCTCCTTCTCCAGAAATCGTGATGCTCAGTCCCTGCTTCCTCTAACAGTCAAGCAGATAAACGATGCGTTTCAGTCAAGTGATGATAAGACCAATTTAATTATTGATGGTGTTGACGTTAACAATGTCACTCTTGTGGGAAGGGTATGCAACAAAGCTGGAAGGATTACTGATGTTACTTTTGTGCTTGATGATGGCACTGGAAGGATTGAGTGTAATAAATGGCTTCAAGAAGCTGTAGATAGTAATGAAGTGGATGGTATCTTGGATGGAATGTATGTGCGTCTCCATGGACACTTGAAAGGTTTTCAGGGTAAAAGGTCCTTAAATGTTTTCTCATTCAGGCCTGTGACTGACTTTAATGAGATTGCCAGCCATTTCATTGATTGTGTATATGTCCATCTTTATAATTCCAAAATACGGCTTCAAGCTGGTGTCCCAAATCAGCAACATGTGACCAATTCCACACCTATTACTCCCACAAAAGGTTATCAAGCTTATGCCGTCCCACCAAATCAATTTACCAGTCAACCTAAAAATGCTCCAAAGAGCGTTGAAGATATGGTATTAGATATTTTGCATCTTCCGAAAAACAGGTCAAGGGATGAGGGAGTCCCTCGTGATCTTATTGCACAGCATCTTGGAATTCCTATGGATAAGCTCATGTTGGCTATTAAAAATCTTATCGAGGAAGGCAACATTTATGAAGCTATAGCTGATCACTATAAGTCTATCATCAATGGTTGA 834 0.4209 MYSTSQFDGNAAFSGGGFMPSQATQATDSSSFSRNRDAQSLLPLTVKQINDAFQSSDDKTNLIIDGVDVNNVTLVGRVCNKAGRITDVTFVLDDGTGRIECNKWLQEAVDSNEVDGILDGMYVRLHGHLKGFQGKRSLNVFSFRPVTDFNEIASHFIDCVYVHLYNSKIRLQAGVPNQQHVTNSTPITPTKGYQAYAVPPNQFTSQPKNAPKSVEDMVLDILHLPKNRSRDEGVPRDLIAQHLGIPMDKLMLAIKNLIEEGNIYEAIADHYKSIING* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1036 277 CDD RPA2_DBD_D 71 164 - -
Lan12g1036 277 SUPERFAMILY "Winged helix" DNA-binding domain 214 273 IPR036390 -
Lan12g1036 277 Pfam Replication protein A C terminal 163 269 IPR014892 -
Lan12g1036 277 Gene3D - 33 168 IPR012340 -
Lan12g1036 277 Gene3D - 210 275 IPR036388 -
Lan12g1036 277 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 273 - -
Lan12g1036 277 PIRSF RPA32 1 275 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lan12g1036 277 PANTHER REPLICATION PROTEIN A-RELATED 1 273 IPR040260 -
Lan12g1036 277 SUPERFAMILY Nucleic acid-binding proteins 41 167 IPR012340 -
Lan12g1036 277 Pfam OB-fold nucleic acid binding domain 72 144 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1036 Lan-Chr12 17026618 17029919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1036 1 274 Core DNA Replication Machinery Family AT2G24490 45.520 5.44e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1036 K10739 - gmx:100782819 410.223