Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1035 ATGGCTACTGATTCATCTTTTGAGGGTGCTGCGCTTGTTCCTTCTAAATGCAGTAATTTGAGTATGAAGGAAAAAAGAGAACTTGTATATGAAATATCAAAGTCTCATGTTGCATCCGAGATACTCCAGTCGTGGAGTCGTCAAGAGATTTTACAAATCTTGTGTGCAGAGATGGGAAAAGAAAGGAAGTATACTGGGCTGACAAAGTTGAAAATTATAGAACACCTTCTAAAAATTGTATGTGAAAAGAAGTCTGAAGGCCATAAAATTACAAAAGACTCTGAACTAAATTCTTCTCCTGCACAAGCTCAGAAATCTGCAAAAAGACAGAGAAAAATTGAAAGTCCTTCTCGATTTCATGTGCCTGCAAACAATGTTTCAGCCAATAATGGTGACGATATGGGTAGTGCCACATACTGCAAAAACTCTGCTTGCAAAGCTACATTAAATCTTGGAGATGCGTTTTGCAAAAGATGTTCTTGCTGCATTTGCCATCAATATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGCTCTGAGTCTCCTTTTCCTGGTGTTTCTTGTGGCTTGTCATGCCATCTTGAGTGTGCTTTAAAGCATGATGGTTCTTGCATTGGCAAAAATGGTGAACGTCCCAAACTTGATGGAGGCTTCTACTGTGTTTCTTGTGGGAAATTAAATGATTTACTGGGATGCTGGAGAAAACAACTGATGGTAGCTAAAGATACCAGACGTGTGGACATACTCTGTTATCGTATCTCCTTAAGCCGAAGACTTTTACAAGGGACTGAAATCTATCAAGAACTTCACAAAATTGTTGATGAAGCCCTGAAGAAACTGAAATCTGAAGTGGGTCCACTGATTGATTCACCGGTGAAGATTGGTAGGGGGATTGTGAATAGGCTTTCATCAGGACCTGAGGTTCAGAAACTCTGTGGTTTGGCTGTGGAATCACTTGATTCACTTCTTTCTAAAAGGATCTTGCCTTCACCACCTATTCCATCAATTCAAGGTGCTAACTTGCTTGCTCCAAATATGGTGAGATTTGAAGATGTCACTGCGACATCCCTCAATGTTATTTTAGTTTCTGAAGACCCTTGTAGAGAAAATATTGCTGGTTACACCTTGTGGCATCGCAAAGTTGATGATGTGGACAATCCAGTGGACCCGACTTGCACTTTGCTTCTACCAAATAGAAGGTTCAGCATCAAGGGTTTAACTCCAGCTACAGAATACATTTTCAAAGTTGTTTCCAATGATTCAAAGGAGTTGGGCATGTGCAAAGTTCATATCTCAACAAAGTTTGGTGAGGATGAAGTGCCTAGTCAGAGCCCAACAACTAACTGTAGCAGCCTTTCCAATCCATCATCAGTGGAAGATGAAACTAATAACAATAATCCATATAGTGATCAGATTGATAATCGAGCAGAACAATATCATACTTATCACATGGATTCTGATCAACTTGCTTCTGGAAATTTATCCAATGATGCTATTAACTGTTCCAATGTAGGTGGAGTAGGACTTCTCACTGACACAGATTCTTTGTCAGATAAACTGCATGCTGTTGGAACAACTAGCGCCATATCTGGTCCTGATGTACTAAAGCTTGAGAACAAGCATTCACCGGAGGAACAAGTCGCCGAAGACATGATCACTGATGGGTTGAATTCCCCTGTTCAAACTGGGAGGGAATGTGTGCCCTTAGTAGGTGCCTCAGAAGGCTTGCCTAATACTCCATGCAAGTTGGAAATACTTAAGGATGGGCTTGGAAGAAATGGTAGATCTAAATCCAGAGGCAATGATCAAGAAAATGGATCTGGAAAAAGAGAGGGACCCCAAGATGGAAGCACATCCAAGAAGAGTAGTGGGGAAAGAAAAGATGAGGGGTGTGGTGATCGTGATTTTGAATATTATGTGAAGGTGATTAGATATTTAGAGTGTGAAGGACATATAGAAAAGAACTTCAGGCAAAAGTTTCTGACTTGGTACAGCCTAAGAGCAACCCCTCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTCATTGAAGATCCTTCATCTCTTGCAGAGCAGCTTGTGGACACCTTTTCAGAATGTATATCAAGCAAGAGAACATCAATGGTGCCAGCTGGGTTTTGCATGAAGCTCTGGCATTGA 2169 0.4062 MATDSSFEGAALVPSKCSNLSMKEKRELVYEISKSHVASEILQSWSRQEILQILCAEMGKERKYTGLTKLKIIEHLLKIVCEKKSEGHKITKDSELNSSPAQAQKSAKRQRKIESPSRFHVPANNVSANNGDDMGSATYCKNSACKATLNLGDAFCKRCSCCICHQYDDNKDPSLWLICSSESPFPGVSCGLSCHLECALKHDGSCIGKNGERPKLDGGFYCVSCGKLNDLLGCWRKQLMVAKDTRRVDILCYRISLSRRLLQGTEIYQELHKIVDEALKKLKSEVGPLIDSPVKIGRGIVNRLSSGPEVQKLCGLAVESLDSLLSKRILPSPPIPSIQGANLLAPNMVRFEDVTATSLNVILVSEDPCRENIAGYTLWHRKVDDVDNPVDPTCTLLLPNRRFSIKGLTPATEYIFKVVSNDSKELGMCKVHISTKFGEDEVPSQSPTTNCSSLSNPSSVEDETNNNNPYSDQIDNRAEQYHTYHMDSDQLASGNLSNDAINCSNVGGVGLLTDTDSLSDKLHAVGTTSAISGPDVLKLENKHSPEEQVAEDMITDGLNSPVQTGRECVPLVGASEGLPNTPCKLEILKDGLGRNGRSKSRGNDQENGSGKREGPQDGSTSKKSSGERKDEGCGDRDFEYYVKVIRYLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFIEDPSSLAEQLVDTFSECISSKRTSMVPAGFCMKLWH* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1035 722 MobiDBLite consensus disorder prediction 91 116 - -
Lan12g1035 722 MobiDBLite consensus disorder prediction 439 473 - -
Lan12g1035 722 Pfam PHD - plant homeodomain finger protein 140 259 IPR032881 -
Lan12g1035 722 CDD PHD_VIN3_plant 160 225 - -
Lan12g1035 722 MobiDBLite consensus disorder prediction 589 633 - -
Lan12g1035 722 Pfam Fibronectin type III domain 345 420 IPR003961 GO:0005515
Lan12g1035 722 ProSiteProfiles Fibronectin type-III domain profile. 345 440 IPR003961 GO:0005515
Lan12g1035 722 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 722 - -
Lan12g1035 722 CDD FN3 345 427 IPR003961 GO:0005515
Lan12g1035 722 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 722 IPR044514 GO:0010048|GO:0040029
Lan12g1035 722 MobiDBLite consensus disorder prediction 590 633 - -
Lan12g1035 722 SUPERFAMILY Fibronectin type III 345 424 IPR036116 GO:0005515
Lan12g1035 722 Gene3D Immunoglobulins 344 465 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1035 Lan-Chr12 17016797 17021212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1035 4 467 PHD Gene Family AT4G30200 52.871 1.57e-153 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1035 - - gmx:100794721 1165.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1035 12 17016797 17021212 Lan1g1235 1 22177007 22181712 LSH
Lan12g1035 12 17016797 17021212 Lan1g0372 1 2896250 2907952 LSH