Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1034 ATGAAGTATATTCGGACCACTAGCTTGAAGAGGCTCTTCTCCTTGAAAAGATGGGGTTTTTGGGAGCAAGTTATGAGCCCCAACGATGAAGTAAACAATGAAAGCTTGGAGATTGTTCCAAGTGAAGAACAAGAAGAAAAACATTCTCAAAGGCCTACTTGGAAATGCTTCTCTTATGAAGAATTGTTTGATGCCACCAATGGCTTCAGTGCAGCAAATTTGGTTGGTAAAGGAGGGTATGCAGAGGTTTACAAAGGAACACTGAAAGATGGTGAAGAAATTGCAGTGAAAAGGCTCACAAAAACTTCAAGTGATGAGAGAAAAGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTTCGACATCCCAACGTGTTGTCTCTAATGGGGTGTTGTATTGACAATGGCCTTTACCTTGTTTTTGAGCTATCATCTAGAGGCTCTATTGCATCTCTTCTTCATGATGAAAAATTGCCTCCGGTGGATTGGAAAACAAGGCATAAGATAGCTCTTGGGACTGCACGTGGCCTTCACTACTTGCACAAAGGATGCAAGAGGAGGATAATCCACAGGGACATTAAGGCTTCAAATATTCTATTGACACTAGATTTTGAACCACGGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCTCAATGGACTCATCATTCAATTGCTCCAATAGAAGGGACATTTGGACATTTGGCACCAGAGTACTATTTGCATGGAGTTGTGGATGAGAAAACAGATGTATTTGCCTTTGGTGTTTTCTTGTTAGAAGTTATCTCTGGAAGGAAACCAGTGGATAGTTCTCACCAAAGCTTACATAGCTGGGCTAAGCCAATATTGAACAAAGGAGAGATAGAAAAGCTGGTAGATCCAAGACTTGAAGGGAACTATGATGTAATACAGTTAAAAAGAGTTGCCTTTGCAGCTTCTCTTTGCATCAGAGCATCTTCAACATGGCGACCTATCATGAGTGAGGTATTAGAGGTAATGGAAGGGGGAGAAATGAATAAGGATAAATGGAAAATGGGAGAGGAAGAAGAAGAGGAAGAAGAGGAGTTATGGGGTTTTGAGGATCTAGAATATGAATATGATAGTTCCTTTTCAATGTCTCTACCAGACTCCATTGGAAGTACTTAG 1155 0.4043 MKYIRTTSLKRLFSLKRWGFWEQVMSPNDEVNNESLEIVPSEEQEEKHSQRPTWKCFSYEELFDATNGFSAANLVGKGGYAEVYKGTLKDGEEIAVKRLTKTSSDERKEKEFLTEIGTIGHVRHPNVLSLMGCCIDNGLYLVFELSSRGSIASLLHDEKLPPVDWKTRHKIALGTARGLHYLHKGCKRRIIHRDIKASNILLTLDFEPRISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDSSHQSLHSWAKPILNKGEIEKLVDPRLEGNYDVIQLKRVAFAASLCIRASSTWRPIMSEVLEVMEGGEMNKDKWKMGEEEEEEEEELWGFEDLEYEYDSSFSMSLPDSIGST* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1034 384 SUPERFAMILY Protein kinase-like (PK-like) 47 336 IPR011009 -
Lan12g1034 384 PANTHER OS08G0249100 PROTEIN 40 366 - -
Lan12g1034 384 Pfam Protein tyrosine and serine/threonine kinase 73 276 IPR001245 GO:0004672|GO:0006468
Lan12g1034 384 Gene3D Transferase(Phosphotransferase) domain 1 147 361 - -
Lan12g1034 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Lan12g1034 384 SMART serkin_6 69 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1034 384 PANTHER OS04G0654600 PROTEIN 40 366 - -
Lan12g1034 384 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Lan12g1034 384 Gene3D Phosphorylase Kinase; domain 1 38 145 - -
Lan12g1034 384 ProSiteProfiles Protein kinase domain profile. 69 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1034 Lan-Chr12 17007094 17010363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1034 39 375 Receptor kinase-like Gene Family AT1G71830 41.954 7.51e-75 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lan12g1034 PK_Tyr_Ser-Thr 3.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1034 - - gmx:100819499 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1034 12 17007094 17010363 Lan1g0375 1 2938610 2942075 LSH
Lan12g1034 12 17007094 17010363 Lan4g0114 4 1737911 1741288 PCT
Lan4g0114 4 1737911 1741288 Lan12g1034 12 17007094 17010363 PCT