Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1030 ATGTGGAATCCCTTGTCATGGGTCATGGAAGCTGCAGCAATTATGGCAATTGCTCTTGCAAATGGTGATGGAAAGCCCCCTGATTGGCAAGATTTTGTTGGTATCGTTTGCTTGTTGGTGATTAACTCTACCATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCTGCTGCTGCTCTTATGGCTGGTCTTGCTCCCAAGACAAAGGTTCTTAGAGATGGTAAATGGAGTGAGGAAGAGGCTGCAATTCTAGTCCCTGGAGACATCATAAGCATCAAACTAGGGGACATTGTTCCTGCTGATGCTCGTCTTCTTGAGGGTGATCCTTTGAAGATTGATCAATCTGCTTTGACGGGAGAGTCACTCCCTGTGACTAAAAATCCCGGGGATGAAGTTTTCTCAGGCTCAACTTGTAAACAGGGAGAAATTGAAGCTATTGTCATTGCAACCGGTGTCCATACATTTTTCGGGAAGGCTGCTCACTTGGTGGATAGTACCAACCAGGTTGGACATTTCCAGAAAGTGCTTACAGCAATTGGAAACTTTTGTATTTGTTCCATTGCAATCGGTATGTTGGCTGAGATCATAGTCATGTACCCAATTCAGCGCCGGAAGTATAGAGATGGAATCGATAACCTTTTGGTCCTCTTGATTGGAGGAATTCCTATTGCTATGCCCACTGTGTTGTCTGTGACAATGGCCATTGGTTCTCACAGGCTCTCTCAGCAGGGTGCTATCACCAAGCGAATGACTGCCATTGAAGAATTGGCTGGTATGGATGTCCTTTGCAGTGACAAGACAGGGACACTCACCCTTAACAAGCTCAGTGTGGACAAGAACTTGATTGAGGTCTTTGCAAAGGGAGTGGACAAAGAACATGTGATGCTTCTTGCTGCAAGAGCTTCCAGGACTGAAAACCAGGATGCCATAGATGGTGCCATTGTTGGAATGCTTGCTGACCCAAAAGAGGCTAGGGCTGGGATAAAAGAAGTGCACTTCTTTCCATTCAATCCTGTTGACAAAAGAACTGCTTTGACTTACATTGATGCTGATGGAAATTGGCACCGGGCAAGCAAAGGTGCTCCCGAACAGATCATTACCCTATGTAACCTCAGGGAAGATGTTGCAAAGAAGGCTCATGTTATCATTGACAAGTTTGCAGAGAGAGGGTTGCGTTCATTGGCTATTGCTAGACAGGAAGTTCCTGAGAAAACAAAAGAAAGTGTTGGTACTCCATGGCAATTTGTTGGCTTGTTGCCACTATTTGACCCCCCGAGACATGACAGTGCTGAAACTATTCGCAAAGCTCTTAATCTTGGTGTAAATGTCAAGATGATTACTGGCGATCAACTTGCCATAGCCAAGGAGACTGGCAGAAGACTTGGGATGGGAACAAATATGTATCCATCTTCGTCCTTGCTTGGTCAAGACAAAGATGCAAGTGTTGTTGCGCTTCCAATAGAAGAGCTGATTGAGAAGGCAGATGGATTTGCTGGAGTCTTTCCAGAGCACAAATATGAAATTGTAAAGAAGTTGCAAGAGAGAAAACACATTTGTGGAATGACCGGAGATGGTGTCAATGATGCTCCTGCTTTGAAGAAGGCTGATATTGGAATTGCTGTTGATGATGCTACTGATGCTGCAAGAGGTGCTTCTGATATTGTATTGACAGAACCTGGATTGAGTGTTATTATTAGTGCAGTCTTAACTAGCAGGGCAATTTTCCAAAGAATGAAGAACTACACGATCTATGCAGTATCTATAACTATCCGTATAGTGCTTGGCTTCATGCTCATTGCACTGATCTGGAAATTTGATTTCTCTCCTTTTATGGTTTTGATTATTGCCATTCTTAACGACGGAACAATCATGACAATCTCAAAGGATAGAGTGAAGCCATCTCCCTTGCCTGATAGCTGGAAACTGAGAGAAATATTTGCTACTGGTATTGTTCTTGGAAGTTACTTGGCATTGATGACTGTCATATTTTTCTGGGCAATGAGAGAAAATTCTTTCTTCCCGGAAAAATTTAACGTTAGGCACCTGACTCATGAGGAAATGATGTCTGCATTGTATCTACAAGTCAGTATAGTTAGCCAGGCTTTGATATTTGTAACCCGTTCCCGAAGCTGGTCCTTTGTTGAACGCCCTGGATTGCTATTAATGGGTGCTTTCCTTATTGCTCAGCTGGTTGCTACACTTATAGCAGTATATGCGGATTGGGGCTTTGCAAAGGTCAAAGGAATTGGATGGGGTTGGGCAGGAGTCATCTGGCTCTATAGTATTATCTTTTATTTTCCTCTTGACTTAATGAAGTTTGCCATCCGGTACATATTGAGTGGCAAAGCTTGGGTAAACATGATAGAAAACAAGACTGCATTTACCACCAAGAAAGACTATGGTAAAGAGGAGAGGGAAGCACAATGGGCAATGGCTCAGAGAACCTTGCATGGACTTCCACCACCAGAATCTTCCAATGTTTTCAATGAAAAGAGTAGTTATAGAGAACTCAGTGAGATTGCTGAGCAAGCCAAGAGAAGAGCTGACGTTGCAAGGCTTCGTGAGCTTCACACACTTAAGGGACATGTTGAGTCTGTGGTGAAGCTGAAAGGTCTCGACATTGATACAATCCAACAGCATTACACTCTCTGA 2652 0.4344 MWNPLSWVMEAAAIMAIALANGDGKPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAIVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMLAEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEELAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKEHVMLLAARASRTENQDAIDGAIVGMLADPKEARAGIKEVHFFPFNPVDKRTALTYIDADGNWHRASKGAPEQIITLCNLREDVAKKAHVIIDKFAERGLRSLAIARQEVPEKTKESVGTPWQFVGLLPLFDPPRHDSAETIRKALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDASVVALPIEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVDDATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGIVLGSYLALMTVIFFWAMRENSFFPEKFNVRHLTHEEMMSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLMGAFLIAQLVATLIAVYADWGFAKVKGIGWGWAGVIWLYSIIFYFPLDLMKFAIRYILSGKAWVNMIENKTAFTTKKDYGKEEREAQWAMAQRTLHGLPPPESSNVFNEKSSYRELSEIAEQAKRRADVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTL* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1030 883 CDD P-type_ATPase_H 1 773 IPR006534 GO:0008553|GO:0016021|GO:0120029
Lan12g1030 883 Pfam haloacid dehalogenase-like hydrolase 259 536 - -
Lan12g1030 883 SUPERFAMILY HAD-like 259 569 IPR036412 -
Lan12g1030 883 Coils Coil 834 854 - -
Lan12g1030 883 Gene3D - 832 883 - -
Lan12g1030 883 Gene3D - 260 559 IPR023214 -
Lan12g1030 883 SUPERFAMILY Calcium ATPase, transduction domain A 66 163 IPR008250 -
Lan12g1030 883 PANTHER CALCIUM-TRANSPORTING ATPASE 1 863 - -
Lan12g1030 883 SFLD p-type atpase 245 573 IPR044492 -
Lan12g1030 883 Gene3D - 28 747 - -
Lan12g1030 883 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 779 IPR023298 -
Lan12g1030 883 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 35 282 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g1030 883 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 497 610 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g1030 883 SFLD C1.7: P-type atpase like 245 573 - -
Lan12g1030 883 PANTHER PLASMA MEMBRANE ATPASE 1 863 - -
Lan12g1030 883 ProSitePatterns E1-E2 ATPases phosphorylation site. 265 271 IPR018303 -
Lan12g1030 883 Gene3D - 66 150 - -
Lan12g1030 883 PRINTS H+-transporting ATPase (proton pump) signature 379 397 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g1030 883 PRINTS H+-transporting ATPase (proton pump) signature 494 510 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g1030 883 PRINTS H+-transporting ATPase (proton pump) signature 522 538 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g1030 883 PRINTS H+-transporting ATPase (proton pump) signature 553 578 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g1030 883 PRINTS H+-transporting ATPase (proton pump) signature 692 713 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g1030 883 Pfam E1-E2 ATPase 65 242 - -
Lan12g1030 883 Gene3D - 275 422 IPR023299 GO:0000166
Lan12g1030 883 PRINTS P-type cation-transporting ATPase superfamily signature 113 127 - -
Lan12g1030 883 PRINTS P-type cation-transporting ATPase superfamily signature 263 277 - -
Lan12g1030 883 PRINTS P-type cation-transporting ATPase superfamily signature 417 428 - -
Lan12g1030 883 PRINTS P-type cation-transporting ATPase superfamily signature 439 449 - -
Lan12g1030 883 PRINTS P-type cation-transporting ATPase superfamily signature 522 541 - -
Lan12g1030 883 PRINTS P-type cation-transporting ATPase superfamily signature 545 557 - -
Lan12g1030 883 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 1 738 IPR006534 GO:0008553|GO:0016021|GO:0120029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1030 Lan-Chr12 16973698 16978396 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1030 1 883 Primary Pumps ATPases AT2G18960 85.876 0.0 1526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1030 K01535 - gmx:100816905 1628.99