Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1026 ATGGCTTCACAGGAGGGGAAAAAGTTGCAGAAGAGTTACTTTGATGTGCTGGGTTTGTGTTGCTCCTCAGAAGTGCCACTAATTGAGAACATCCTCAAACCTCTTGAAGGTATCAAAGAGGTTTCAGTCATTGTTCCATCCAGAACTGTTATTGTTGTTCATGACATTCTTCTCATTTCCCAACTCCAAATTGTTAAAGCTCTGAATCAAGCTAGACTACAAGCGAATATTAGAGTTTATGGGGATGAAAAGAACCAAAAAAGATGGCCAAGTCCTTATGCCATTGCTTCTGGGGTTCTACTTTTGCTTTCATTTCTAAAGTATGTGTTCCATCCGTTGCAATATCTGGCCTTAGGAGCAGTTGCTGCTGGTGCCTTTCCTATCATCTTAAAAGCTATTGTGTCCATTCGGAACCTTAGATTTGACATTAACATTCTCATCATTGTAGCAGTTGTTGGGACAATTGTTATGAATGATTATTTGGAAGCCGGGACCATTGTTTTCCTCTTCTCAATTGCAGAATGGCTTGAGACAAGGGCAAGTCACAAGGCAAACACAGTAATGTCATCGTTGATGAACATAGCCCCTCAAAAAGCAGTGATAGCTGAAACAGGAGAGGTGGTAGATGCTGATGTTGTGAAACTAAACACCATTCTTGCAGTTAAAGCTGGGGAGGTCATACCCATTGATGGTGTTGTTATAGATGGAAACTGTGAAGTTGATGAGAAAACTTTGACAGGAGAATCATTCCCAGTGCCTAAACAAAAGGATTCTATTGTATGGGCTGGCACCATCAATTTAAATGGTTATATCAGTGTCAAAACTACTGCATTACCTGAGGATTGTGTTGTGGCTAAAATGGCAAAGCTTGTGGAAGAAGCTCAAAACAGCAAAACCAGCACTCAAAGATTGATTGACAAGTTTGCCAAATTTTACACCCCGGCTGTGGTAGTCATATCAACCCTTGTAGCTGTGATTCCACTTGCCTTAAAAGTCCATAATGAGAGACACTGGCTTCACTTTGCATTGGTTGTTTTAGTAAGTGCATGTCCATGTGCACTTATCCTTTCAACACCAGTTGCAACCTTTTGTGCTTATACAAAAGCAGCTACATCTGGTCTTCTCATCAAAGGGGGTGATCATCTTGAAACACTAGCAAAAATTAAGGTCATGGCTTTTGATAAAACTGGTACCATAACAATGGGCGAATTTATGGTGACAAATTTTCAGTCCCTTTCAGATGACATTGATTTGAACACATTGCTTTACTGGGTGTCAAGCATTGAAAGCAAGTCAAGTCATCCCTTGGCAGCAGCAATTATTGATCATGGAAGGTCTCTGTTGATTGAACCAAAGCCTGAAAAAGTGATGGAATTTGAAAATTTTCCTGGAGAAGGAATATGTGGAAAAATTGATGAGCGAGTTCTTTACATTGGAAACAGAAAAATTGCTACTAGAGCTGGGTCTGAAACAGTTCCAACCTTACAAGGTGAAAATCAAAGAGGAAAAACCACTGGATACATATACTCCGACGCAACCCCGGTCGGAATTTTCTCCCTTTCAGATGCTTGCCGGTCAGGTGTTCAGGAGGCCATAGGGCAGCTGAAGTCATTGGGAATAAAAACTATTATGCTTACCGGAGATAGTGAAGCAGCTGCAATTCAAGCACATGAGCAGCTAGGGAAGGCTCTGGAGTTGGTCCATGCAGAACTTTTACCAGAAGACAAAGTAAAAATCATCTCAGAATTTAAAAAGGAAGGTCCAACAGCCATGGTTGGAGATGGTTTGAACGATGCGCCTGCATTAGCTACAGCTGATATAGGAATCTCAATGGGCATTTCAGGTTCTGCATTGGCAAGTGAGACAGGCAATATAATTCTTATGTCAAATGACATTAGGAAGATACCAGAAGCCATAAAGCTTGCAAGAAAATCTCATAGGAAAGCAATAGAAAATATTATTTTATCAGTTATTACTAAGGCTGCAATTATTGGTTTGGCCATTGGTGGTTATCCAATTATTTGGGCTGCAGTTCTTGCTGATGTTGGAACATGTCTGTTGGTCATCTTAAACAGCATGTTGCTTCTGAGAAAAGGACACAATCATGGAGGAATATCTTGTAGATCTTCTTCTACTCAGCCACATATCCATAAAAATGGATGTGGTGGCACTACTTGCAGTTCTTCTCATCACCATGACAATTATGATCACCAACACAATAATGTTCATGATCGTCAACACCATCATGATCACCACCACCATGATGATCATGATCTTCAACACGATCATAATCACCACCACCACCATGATGATCATGATCACCACCACCATCATGATGATCACCACCATCATCATGATGATCATGTTCATCAACATGATCATGATCACCACCACCATGATGATCACCATTGTGATCCTGTTCATCATGATCATCACCAATCAACCTCAACATCATAG 2457 0.4066 MASQEGKKLQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDILLISQLQIVKALNQARLQANIRVYGDEKNQKRWPSPYAIASGVLLLLSFLKYVFHPLQYLALGAVAAGAFPIILKAIVSIRNLRFDINILIIVAVVGTIVMNDYLEAGTIVFLFSIAEWLETRASHKANTVMSSLMNIAPQKAVIAETGEVVDADVVKLNTILAVKAGEVIPIDGVVIDGNCEVDEKTLTGESFPVPKQKDSIVWAGTINLNGYISVKTTALPEDCVVAKMAKLVEEAQNSKTSTQRLIDKFAKFYTPAVVVISTLVAVIPLALKVHNERHWLHFALVVLVSACPCALILSTPVATFCAYTKAATSGLLIKGGDHLETLAKIKVMAFDKTGTITMGEFMVTNFQSLSDDIDLNTLLYWVSSIESKSSHPLAAAIIDHGRSLLIEPKPEKVMEFENFPGEGICGKIDERVLYIGNRKIATRAGSETVPTLQGENQRGKTTGYIYSDATPVGIFSLSDACRSGVQEAIGQLKSLGIKTIMLTGDSEAAAIQAHEQLGKALELVHAELLPEDKVKIISEFKKEGPTAMVGDGLNDAPALATADIGISMGISGSALASETGNIILMSNDIRKIPEAIKLARKSHRKAIENIILSVITKAAIIGLAIGGYPIIWAAVLADVGTCLLVILNSMLLLRKGHNHGGISCRSSSTQPHIHKNGCGGTTCSSSHHHDNYDHQHNNVHDRQHHHDHHHHDDHDLQHDHNHHHHHDDHDHHHHHDDHHHHHDDHVHQHDHDHHHHDDHHCDPVHHDHHQSTSTS* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1026 818 SUPERFAMILY Calcium ATPase, transmembrane domain M 142 386 IPR023298 -
Lan12g1026 818 Gene3D - 383 643 IPR023214 -
Lan12g1026 818 SUPERFAMILY Calcium ATPase, transduction domain A 206 291 IPR008250 -
Lan12g1026 818 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 166 675 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan12g1026 818 Pfam haloacid dehalogenase-like hydrolase 388 606 - -
Lan12g1026 818 Pfam E1-E2 ATPase 202 370 - -
Lan12g1026 818 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 5 712 - -
Lan12g1026 818 MobiDBLite consensus disorder prediction 732 818 - -
Lan12g1026 818 ProSitePatterns E1-E2 ATPases phosphorylation site. 394 400 IPR018303 -
Lan12g1026 818 Gene3D - 180 295 - -
Lan12g1026 818 SFLD C1.7: P-type atpase like 375 644 - -
Lan12g1026 818 PRINTS Copper-transporting ATPase signature 183 201 - -
Lan12g1026 818 PRINTS Copper-transporting ATPase signature 314 328 - -
Lan12g1026 818 PRINTS Copper-transporting ATPase signature 570 587 - -
Lan12g1026 818 PRINTS Copper-transporting ATPase signature 627 641 - -
Lan12g1026 818 SUPERFAMILY HMA, heavy metal-associated domain 8 76 IPR036163 GO:0046872
Lan12g1026 818 Gene3D - 403 524 IPR023299 GO:0000166
Lan12g1026 818 MobiDBLite consensus disorder prediction 784 812 - -
Lan12g1026 818 SUPERFAMILY HAD-like 391 693 IPR036412 -
Lan12g1026 818 CDD P-type_ATPase_HM 94 694 - -
Lan12g1026 818 PRINTS P-type cation-transporting ATPase superfamily signature 241 255 - -
Lan12g1026 818 PRINTS P-type cation-transporting ATPase superfamily signature 392 406 - -
Lan12g1026 818 PRINTS P-type cation-transporting ATPase superfamily signature 516 527 - -
Lan12g1026 818 PRINTS P-type cation-transporting ATPase superfamily signature 538 548 - -
Lan12g1026 818 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Lan12g1026 818 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Lan12g1026 818 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 5 712 - -
Lan12g1026 818 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 143 697 - -
Lan12g1026 818 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 143 695 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lan12g1026 818 SFLD p-type atpase 375 644 IPR044492 -
Lan12g1026 818 ProSiteProfiles Heavy-metal-associated domain profile. 11 77 IPR006121 GO:0046872
Lan12g1026 818 MobiDBLite consensus disorder prediction 732 777 - -
Lan12g1026 818 Gene3D - 6 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1026 Lan-Chr12 16931281 16938759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1026 7 814 Primary Pumps ATPases AT4G30110 60.660 0.0 1036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1026 K01534 - gmx:100817567 1247.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1026 12 16931281 16938759 Lan1g1244 1 22287740 22295583 LSH