Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1022 ATGTCTTCACCGTGTTTAAGTGGTGGTGGAGGAAGAACTTATGGGTTAGATTTGGAATTTCTAAAATCAGCTTCATTCTCAGTGTGTTCTTCTTCTTCTTCACCATCTTCAACAATATCAGAATCAAGCAATTCCCCATTAACAATCTCAACTACAAAACCCAGAACCCCAAGAAAGAGACCCAATCAAATCTACAATGAAGCCGCATCACTTCTCTCCACCGCATATCCAAACCTCTTCCCTTCCAAAAGCCTCAAAACTCATCCACCACCACCGCCGCCGAATATATTTTTCGATGAACCTCCTTCATCGGAAGTACTATTACCTTTCAGGGTTTTTGACTCATCTTCTTCCTTTTTGATACATCAGCATAAGCCTAGTTTTTCAATGGAGCCTAAGGTGTTGATGTTGCAAGAGAAAACATGTCAGAGTCCGGTGGAGATAAATTCGGCCTCGGCGATGATAAATTCACTCGAATTGGAGGATGATTGTGGTGAAGATTTTGATGCGGAATCGATTCTCGATGAGGAAATTGAAGAAGGGATTGATAGTATTATGGGTAGTGTGGCTGAGCAAGAAGAGACTAACGGCGCCGCCGTCTCATGTTTGGGGATTCCGGCGTTTGGATTTGGAGGGAAATTGGATTGCCGGTTAGGTTTGAGAAGGGCTCTCCGTCATGTAGATGACGGTGGAAACTGGTGGAATTTGCCGGCGGTTGATATACTTCAAATCTCGCCAAAAATAATCAACAAGCCTCCTCCTCAGCCTCCGGCCGCGGCGGCAGAGAAGAAGAAGAAAAAGAAAGTGGAGGTGAAGAACTCGGAGCCGGTGAAGGGAAATCCAATGGCGAAATCGAATCCGGGTTTGATGTTGAAATTGAATTATAAGGACGTGAAGAATGCCTGGTCCGATAAGGGGTCACCGTTCGCCGATGACAGCCCGGTTTCCAACGCATCGGGAAATGACGTCACAGCTCGGTTGTCTAAAATTGATTTGTTGTGGGAGAATGGAGGAATGAGAGAAGCTAGCGTGCTACGCTTCAAAGAAAAGCGGCGTACGCGTCTCTTCTCTAAGAAGATCAGATATCAGGTCAAAAAGGTCAACACTGATCGACGGCTCAGAATGAAGGTACCACCAAGTTAA 1143 0.4549 MSSPCLSGGGGRTYGLDLEFLKSASFSVCSSSSSPSSTISESSNSPLTISTTKPRTPRKRPNQIYNEAASLLSTAYPNLFPSKSLKTHPPPPPPNIFFDEPPSSEVLLPFRVFDSSSSFLIHQHKPSFSMEPKVLMLQEKTCQSPVEINSASAMINSLELEDDCGEDFDAESILDEEIEEGIDSIMGSVAEQEETNGAAVSCLGIPAFGFGGKLDCRLGLRRALRHVDDGGNWWNLPAVDILQISPKIINKPPPQPPAAAAEKKKKKKVEVKNSEPVKGNPMAKSNPGLMLKLNYKDVKNAWSDKGSPFADDSPVSNASGNDVTARLSKIDLLWENGGMREASVLRFKEKRRTRLFSKKIRYQVKKVNTDRRLRMKVPPS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1022 380 PANTHER OS02G0148000 PROTEIN 1 376 - -
Lan12g1022 380 MobiDBLite consensus disorder prediction 28 59 - -
Lan12g1022 380 MobiDBLite consensus disorder prediction 260 274 - -
Lan12g1022 380 MobiDBLite consensus disorder prediction 28 61 - -
Lan12g1022 380 Pfam CCT motif 340 376 IPR010402 GO:0005515
Lan12g1022 380 ProSiteProfiles CCT domain profile. 340 380 IPR010402 GO:0005515
Lan12g1022 380 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 376 - -
Lan12g1022 380 MobiDBLite consensus disorder prediction 249 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1022 Lan-Chr12 16900407 16903433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1022 266 376 C2C2-CO-like Transcription Factor Family AT1G68520 35.938 2.87e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan12g1022 CCT 4.2e-09 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1022 - - aprc:113845796 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1022 12 16900407 16903433 Lan1g1251 1 22357982 22360055 LSH
Lan12g1022 12 16900407 16903433 Lan1g0391 1 3081140 3084684 LSH