Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1013 ATGGGGAACTGTTGGAGCCTTCAATCAGGTTCACCAGGCCCTGTCACTCATCCCTCCGGCAGAAATCTATTAGGTAGCGGTCAATTTCCTGCTAGTTTCAGCAACACCAGATTATCACAGAATTTCAATTCTACTTCACTTGGGCATAGCAGCAACTCTGGGCGAATTAGTCGGTTATTTGGTCCAAGTAGCAGTAACAATACTAGTACATCTCTTTTGGGATCTGAGAATAGCCAAGTCTCTCGAGCAAGAGATGAAAAAGAGTTCCCTAATGGGCAGATCTTGGATGTTGCAAACTTGGCAGTGTTTACTTTGGCAGAACTGAAGGCAGCAACTAAAAATTTCAGACCTGATACTTTGTTAGGAGAGGGAGGTTTTGGTAGAGTATACAAGGGCTGGATTAAGGAGAGAACCGGTACAAATAGAGCCGAGGAATTGACTATTGCCATCAAGGTATTGAATTCTGATAGCAGACAAGGATTTGAAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTTGTAAAGTTGTTGGGATTAGGGCGAGAGGATAGTCAACTATTCCTGGTCTATGAGTTTATGAGTCGTGGCAGCTTAGATAACCACTTATTTGGAAGAGGTGCAAGTGTTCGTCCACTTTCTTGGGACACAAGGTTAAAGATTATGATTGGAGCAGCAAGGGGACTGGCTTTTCTTCACACTTTAGAGAAGAAAATCATATACAGAGATTTTAAGCCCTCAAATATATTACTTGACAAGGCGTATACAGCCAAATTATCTGACTTTGGATTAGCCAAATCTATTCCCTATCCTGACCAGTCTCACGTAACAACACGGGTTATGGGAACAAGTGGCTATGCTGCTCCTGAATACATTGCCACAGGTCATTTGTACGTGAAAAGTGATGTCTATGGATTCGGGATTGTTTTGTTAGAGATGCTGACTGGCTCACGGATAGGTCATATAATGCGCCTCTCTCAGCAACAGTCTTCCTTACAGAAGTGGCTCAAATCAAATCTATTAAATAGAGGGAAAATGAGAATCAATATGGATGCAAGGTTGGAAGGCAAGTATCCACCCAAGTTAGCATTTGAAGTTGCTCAACTTTCTCTCAAATGCATACAAACAGATGCCAAAGTTAGGCCATCAATGGTAGAAGTTCTTGAAACATTAGAAAAGATTGAAGCAGCTAATGAGAATCCAGCTAATAGCATGAAACGAGGTACTCGTTCTCGGACAGTGAACCAAAATGGCCAGGCAGATGGTGGTTAA 1287 0.4227 MGNCWSLQSGSPGPVTHPSGRNLLGSGQFPASFSNTRLSQNFNSTSLGHSSNSGRISRLFGPSSSNNTSTSLLGSENSQVSRARDEKEFPNGQILDVANLAVFTLAELKAATKNFRPDTLLGEGGFGRVYKGWIKERTGTNRAEELTIAIKVLNSDSRQGFEEWQSEVNFLGRLSHPNLVKLLGLGREDSQLFLVYEFMSRGSLDNHLFGRGASVRPLSWDTRLKIMIGAARGLAFLHTLEKKIIYRDFKPSNILLDKAYTAKLSDFGLAKSIPYPDQSHVTTRVMGTSGYAAPEYIATGHLYVKSDVYGFGIVLLEMLTGSRIGHIMRLSQQQSSLQKWLKSNLLNRGKMRINMDARLEGKYPPKLAFEVAQLSLKCIQTDAKVRPSMVEVLETLEKIEAANENPANSMKRGTRSRTVNQNGQADGG* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1013 428 MobiDBLite consensus disorder prediction 407 428 - -
Lan12g1013 428 MobiDBLite consensus disorder prediction 44 79 - -
Lan12g1013 428 ProSiteProfiles Protein kinase domain profile. 115 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1013 428 SUPERFAMILY Protein kinase-like (PK-like) 100 400 IPR011009 -
Lan12g1013 428 Pfam Protein kinase domain 118 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g1013 428 MobiDBLite consensus disorder prediction 403 428 - -
Lan12g1013 428 ProSitePatterns Protein kinases ATP-binding region signature. 121 151 IPR017441 GO:0005524
Lan12g1013 428 PANTHER OS01G0588500 PROTEIN-RELATED 12 428 - -
Lan12g1013 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Lan12g1013 428 CDD STKc_IRAK 121 399 - -
Lan12g1013 428 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 12 428 - -
Lan12g1013 428 MobiDBLite consensus disorder prediction 1 21 - -
Lan12g1013 428 Gene3D Transferase(Phosphotransferase) domain 1 199 424 - -
Lan12g1013 428 MobiDBLite consensus disorder prediction 44 86 - -
Lan12g1013 428 Gene3D Phosphorylase Kinase; domain 1 100 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1013 Lan-Chr12 16812937 16816007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1013 50 396 Glycoside Hydrolase AT3G07070 42.857 3.04e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan12g1013 Pkinase 9.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1013 - - gmx:100813304 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1013 12 16812937 16816007 Lan1g1259 1 22425134 22428257 LSH