Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1009 ATGATACCTGCATACCCCCATTCACTTTCTTCTATTATGCCTCCTCTTGATCATAACCATCACCACCTCTTCAATCCAAATCATCAAGCCTCCTCTTCTTTATTTTCTTCTTCATCATTTCATACTCTCTTCAACCCATCGGATCATGATCAACAAGGATCTTTTTGCTGGGAACCAAAGCACTTACCAAGTGATCATGAAGAGACTGGGAAGATTATTCCTTTAAGTGGATCATCATGGGATCAAACAGCATCAGAAAATCACGAGAGCAGCATTGGAAGTAAGGTAACAGTTTGGAAGAAAGAAGATATGGCTGAAAATCTTCAAGCAGGTGATGAGGATGGTTCACTGAAGTTGTTACCTTCAAAGATGAGAATTATGCGAAAGATGATGGTTTCAGGTCAAACAACAGATTCATATGTAGGAGGCAGCTCTATGCAGAAGTTTGAAGATCAAAAGCAACCACTGTCACCTCTTGGAACTGATAATAGCAGCAACAATTATCCAAAGCACAGCAATAACATTGTTAGGGTTTGTTCTGACTGCCACACCACTAAGACTCCTCTCTGGAGGAGTGGTCCAAGGGGTCCCAAGTCACTATGCAATGCGTGTGGGATCAGACAAAGGAAGGCGAGACGTGCCATGGCAGTGGCTGCAGCAGCATCAGAAAATGGCACAATTGTAGTGGCAGCAGCTCAGAAATCCGTGAAGGGAAAAGAGAAGAAGTCCAAAGTTGAATATGCACCACAACAGATGAAAAGGAAGCGCAAGCTTATAGCCAAACCATCAAGTGAAAGTAGAAACAAGTTCAGTTTCGAGGATTTGACATTAAGATTAAGTAAGAATGTGGCTTTCAAACAAGTTTTTCCTCAGGACGAAAGGGAAGCTGCTATTCTGCTCATGGCATTATCATATGGCTTAGTTCATGGATGA 933 0.4212 MIPAYPHSLSSIMPPLDHNHHHLFNPNHQASSSLFSSSSFHTLFNPSDHDQQGSFCWEPKHLPSDHEETGKIIPLSGSSWDQTASENHESSIGSKVTVWKKEDMAENLQAGDEDGSLKLLPSKMRIMRKMMVSGQTTDSYVGGSSMQKFEDQKQPLSPLGTDNSSNNYPKHSNNIVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAVAAAASENGTIVVAAAQKSVKGKEKKSKVEYAPQQMKRKRKLIAKPSSESRNKFSFEDLTLRLSKNVAFKQVFPQDEREAAILLMALSYGLVHG* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1009 310 CDD ZnF_GATA 178 208 IPR000679 GO:0006355|GO:0043565
Lan12g1009 310 Pfam GATA zinc finger 179 212 IPR000679 GO:0006355|GO:0043565
Lan12g1009 310 ProSitePatterns GATA-type zinc finger domain. 179 204 IPR000679 GO:0006355|GO:0043565
Lan12g1009 310 Gene3D - 169 261 IPR013088 GO:0006355|GO:0008270
Lan12g1009 310 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 310 - -
Lan12g1009 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 213 - -
Lan12g1009 310 SMART GATA_3 173 224 IPR000679 GO:0006355|GO:0043565
Lan12g1009 310 MobiDBLite consensus disorder prediction 137 169 - -
Lan12g1009 310 ProSiteProfiles GATA-type zinc finger domain profile. 173 209 IPR000679 GO:0006355|GO:0043565
Lan12g1009 310 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1009 Lan-Chr12 16788939 16791059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1009 115 310 C2C2-Gata Transcription Factor Family AT4G26150 43.519 9.26e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan12g1009 GATA 3.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1009 - - gmx:100810698 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1009 12 16788939 16791059 Lan15g0137 15 1416204 1418407 PCT
Lan15g0137 15 1416204 1418407 Lan12g1009 12 16788939 16791059 PCT