Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0999 ATGATAGTTGGTGGTAGTAGTGAAACGACGCCGTTTTCAGAACCTAGTGCAGCGAGAGTGAAACTAGAGCAAGTCACGTTTTTCGACGACAACGCTCGTTTCAACAACTCTGGTATATCATCTTCCTCTGAAGAAGGAGTTTTCAGCGAAAGTAAGAATTCTGGAGTGACTGAAGAAGAGGGTGGTAGTGCTAATAATAATAATACTATAAAAGAAGAGGTTATTGATGATGTTGGTGTTAATGTCTCATCTTCTTCATCTTCTATGGAGGATATGCCAAAACCGATGGAAGGGTTGAACGAGGTGGGGCCACCTCCGTTTCTGAAGAAAACCTTTGAAATGGTTGAGGACCCTGAAACTGACCCCATTGTAGCGTGGAGTGAAAATCGTGATAGCTTCATTGTTTTCGATTCTCATGAATTCTCTAAACTCCTTCTTCCTAAGTACTTCAAGCACAGCAATTTCTCTAGCTTCATCCGCCAGCTCAACACTTATGGGTTTAGGAAGGTTGATTCAGATCGGTGGGAGTTTGCAAATGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAAAACATTAGGAGAAGGAGTAAGTACAACAAACAGCATGAAGGAACATTCAATTCAATGAAACCTGGCCTAGAGGCTGAAGTTGAGAAACTGAAGAAGGACCAAAACATAATGAAACTTGAAATCCTGAAGCTGAGGCAGCAGCAGGAGAATTCACATATGCAACTCACAAATGTTCAGGAGCAAATTCGATGTGCCGAAATGAAGCAATATCAAATGATATATTTCCTCACCAGAATGTGTAGAAAGCCAATGAATGTTGATCAGTTAATCCAAAAGATTAAGAGAAAAAGAGAGCTTGATGGCAATGACATTGTTAAGAGGCTCAGATTGCTTGGAGGACAGTGCCCTAAGACCATGGAGACAAATACCCTTAATGCTGATTATAGAGACCAAGGTCATGAACAATTCACTACATTGCAATCTGACCTCACTGGGCTCCTATCTGAAAGTGTTAACAACAATAGCTGCATGGGTATGGAAGATGAATTATGTAGATCAGTGCAAGGCTTAAGAGGCTATGGTTCTAGAACAAATAATGGAAAGGATGTATCTTCTGCTTATCATGTTGTGTCAGAGAAACTAATGAGGGAAAATTCTGTAGTTGATGAAGAACAACTAGATGTGAATGACTCAAATATCTATCTTGAATTAGAGGATTTGATAACTAAGCCTTCTGATTGGGTTGGATCAGCAAGTGGATTAGTGGGACAAACTAGTTGA 1293 0.4029 MIVGGSSETTPFSEPSAARVKLEQVTFFDDNARFNNSGISSSSEEGVFSESKNSGVTEEEGGSANNNNTIKEEVIDDVGVNVSSSSSSMEDMPKPMEGLNEVGPPPFLKKTFEMVEDPETDPIVAWSENRDSFIVFDSHEFSKLLLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKQHEGTFNSMKPGLEAEVEKLKKDQNIMKLEILKLRQQQENSHMQLTNVQEQIRCAEMKQYQMIYFLTRMCRKPMNVDQLIQKIKRKRELDGNDIVKRLRLLGGQCPKTMETNTLNADYRDQGHEQFTTLQSDLTGLLSESVNNNSCMGMEDELCRSVQGLRGYGSRTNNGKDVSSAYHVVSEKLMRENSVVDEEQLDVNDSNIYLELEDLITKPSDWVGSASGLVGQTS* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0999 430 Gene3D - 100 197 IPR036388 -
Lan12g0999 430 Coils Coil 218 238 - -
Lan12g0999 430 SUPERFAMILY "Winged helix" DNA-binding domain 103 196 IPR036390 -
Lan12g0999 430 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 84 416 - -
Lan12g0999 430 ProSitePatterns HSF-type DNA-binding domain signature. 146 170 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan12g0999 430 MobiDBLite consensus disorder prediction 32 103 - -
Lan12g0999 430 Pfam HSF-type DNA-binding 107 196 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan12g0999 430 MobiDBLite consensus disorder prediction 32 72 - -
Lan12g0999 430 SMART hsfneu3 103 196 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan12g0999 430 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 84 416 IPR027725 -
Lan12g0999 430 PRINTS Heat shock factor (HSF) domain signature 107 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan12g0999 430 PRINTS Heat shock factor (HSF) domain signature 145 157 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan12g0999 430 PRINTS Heat shock factor (HSF) domain signature 158 170 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0999 Lan-Chr12 16695726 16697958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0999 93 418 HSF AT2G26150 41.493 5.56e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan12g0999 HSF_DNA-bind 1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0999 K09419 - gmx:100818430 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0999 12 16695726 16697958 Lan1g1271 1 22516912 22519448 LSH