Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0996 ATGGAGAATGGAAATGGAAATGGCCCGACAAATGAGGATGAACAAGCATTGGAATGCGATGAGGATGAAGGAGATGAGGTTTCGAGCATGACAATGGAGAGGGTAGCCGCGGCTAAGAAATTTATTGAGAACCATTACAAGTCTGAGAAGAAGCTATACCACGAACGCAAAGAGAGGCGTTCAGTGCTAGAAAAGAAGTTAGCATCTTCTCATGTTCCAGAAGAGGAACAGGTGGATCTACTAAAGGATTTAGAGAGCAAGGAAACTGAATATATACGCCTAAAAAGACATAAAATATGTGCTGATGATTTTGATCTTCTAACCATTATAGGCAGGGGAGCTTTTGGAGAGGTATCACTCTGCAGGGAGAAGAAATCTGGTAACATATATGCCATGAAAAAATTGAAGAAGTCTGAAATGCTCCGAAGGGGACAAGTTGAGCATGTTAGAGCGGAAAGGAACCTACTTGCAGAAGTTGCTAGTGATTGCATTGTGAAACTCTATTACTCTTTTCAGGATGTTGAACACTTATATCTGATTATGGAGTATTTACCTGGCGGTGATATAATGACTTTGCTAATGAGGGAAGAAACTTTAACTGAAACTGTAGCTAGATTTTACATTGCCCAAAGTGTTTTGGCCATTGAGTCTATTCATAAACACAACTACATTCACCGAGATATAAAACCTGACAACCTTCTACTAGACCAAAATGGTCACTTGAAGCTCTCTGATTTTGGCCTTTGCAAGCCACTTGACTACGTAACTTTGTCGTCTATAGATGAAGATGAATTCCTTGATGACGAAAACTTGAATGATACCATAGATGTTAGAAACGGGAGGCGCTGGGAAAGCCCCCAAGAACAACTTCAGCACTGGCAAATGAACAGGAGGAAGCTGGCATTTTCGACAGTTGGAACTCCTGATTACATAGCTCCTGAAGTATTGCTTAAAAAGGGATATAGTGTGGAGTGTGATTGGTGGTCTCTTGGTGCTATAATGTATGAGATGCTTGTTGGTTATCCCCCATTTTACTCCGATGATCCTCTAACAACATGCAGAAAGATCGTGTATTGGAAAAATCACTTAAATTTTCCAGAGGAGGCCAGGTTGACGCCTGAAGCAAAGGATCTAATATGTAGATTGCTTTATGATGTTGAGCATAGACTTGGTACTAGAGGAGCAGATGAAATTAAAGCTCATCCTTGGTTCAAAGATGTTGCATGGGACAAGCTCTATGAAATGGATGCAGCATTTAAACCCCAAGTCAATGGAGAACTTGACACTCAAAATTTTATGAAATTTGATGAGGTTGAAGTACAATCAAAATCAACTAGAACTGGATCTGGTGCTTTCAGAAAGATGACCCCTCAAGATCTCAATTTTGTTGGCTATACATACAAAAATTTTGCTGCCGTCAAGGGGAAGCATAATTCTACTGGGAAGGAGGGCATGCCATCACAGCAGTCATCAGTGGACTCTGCACAAGTGCTTGCATCCTCTGGAAATGACTGA 1515 0.4086 MENGNGNGPTNEDEQALECDEDEGDEVSSMTMERVAAAKKFIENHYKSEKKLYHERKERRSVLEKKLASSHVPEEEQVDLLKDLESKETEYIRLKRHKICADDFDLLTIIGRGAFGEVSLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASDCIVKLYYSFQDVEHLYLIMEYLPGGDIMTLLMREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDQNGHLKLSDFGLCKPLDYVTLSSIDEDEFLDDENLNDTIDVRNGRRWESPQEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYSVECDWWSLGAIMYEMLVGYPPFYSDDPLTTCRKIVYWKNHLNFPEEARLTPEAKDLICRLLYDVEHRLGTRGADEIKAHPWFKDVAWDKLYEMDAAFKPQVNGELDTQNFMKFDEVEVQSKSTRTGSGAFRKMTPQDLNFVGYTYKNFAAVKGKHNSTGKEGMPSQQSSVDSAQVLASSGND* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0996 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Lan12g0996 504 Gene3D Phosphorylase Kinase; domain 1 423 433 - -
Lan12g0996 504 ProSiteProfiles Protein kinase domain profile. 104 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0996 504 Gene3D Transferase(Phosphotransferase) domain 1 188 253 - -
Lan12g0996 504 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Lan12g0996 504 MobiDBLite consensus disorder prediction 476 504 - -
Lan12g0996 504 SUPERFAMILY Protein kinase-like (PK-like) 86 450 IPR011009 -
Lan12g0996 504 CDD STKc_NDR_like 102 468 - -
Lan12g0996 504 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 12 499 - -
Lan12g0996 504 Gene3D Phosphorylase Kinase; domain 1 63 187 - -
Lan12g0996 504 SMART pkinase_C_6 405 469 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lan12g0996 504 MobiDBLite consensus disorder prediction 481 504 - -
Lan12g0996 504 ProSiteProfiles AGC-kinase C-terminal domain profile. 405 477 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lan12g0996 504 Gene3D Transferase(Phosphotransferase) domain 1 303 422 - -
Lan12g0996 504 SMART serkin_6 104 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0996 504 Pfam Protein kinase domain 296 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0996 504 Pfam Protein kinase domain 106 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0996 504 PANTHER SERINE/THREONINE-PROTEIN KINASE 12 499 - -
Lan12g0996 504 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0996 Lan-Chr12 16676423 16680678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0996 21 487 AGC Kinase Gene Family AT2G19400 75.314 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lan12g0996 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0996 K08790 - gmx:100811359 801.971