Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0993 ATGAACAAAAGAAACTTTGGCATTGGTCTCAAACTCTCTTTACCTGTGTCTGATCAAGCTTCTTTTGCCAAGTTTCTAACTGAAAGTGGCACCTTTAAGGATGGGGATCTGCTTGTTAACAGAGATGGTGTTAGAATTGTTTCTCAGAGTGAAGTTGAAGCTCCACCCCCAATCAAGCCAACAGATGAGCAGTTAAGTTTGGCAGACATAGAAATAATCAAAGTGGTTGGGAAGGGAAATGGAGGGATTGTGCAATTGGTGCAACACAAATGGACTAGCCAGTTTTTTGCATTAAAGATAATTCAAATGAATATTGAGGAGTCGATGCGCAAGCAGATAGCAAAAGAGCTGAAAATTAATCAAGCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAGTCATTTTATGATAATGGTGTCATATCTATCATCTTAGAGTACATGGATGGAGGGTCCTTAGCAGATCTTCTGAAGAAAGTTGCAACAATTCCAGAGCCTCATCTTGCTGCCATCTGTAAGCAGGTTCTGAAGGGTTTAATGTATCTTCACCATGAAAGGAATATTATCCACAGAGACTTGAAGCCTTCTAATTTGTTGATAAACCAAAGAGGCGAAGTAAAAATAACTGACTTTGGTGTAAGTGCAATTATGGAAAGCACATCTGGTCAAGCAAATACTTTCATTGGCACATGCAACTATATGTCGCCAGAGAGAATCAATGGAAGCCAGTGTGGCTACAACTACAAAAGTGATATATGGAGTTTTGGGCTAATATTGCTGGAGTGCGCTTTGGGGAAGTTTCCATATTCTCCACCAGATCAAAGTGAAAGTTGGGAAATTTTTGAGCTAATTGAAGCCATTGTCGATCAACCTCCTCCTAGGGGGGGGTCTGAGAGATATTCTAAAATTATGCTTGCAGTTTAA 924 0.4004 MNKRNFGIGLKLSLPVSDQASFAKFLTESGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDEQLSLADIEIIKVVGKGNGGIVQLVQHKWTSQFFALKIIQMNIEESMRKQIAKELKINQAAQCPYVVVCYQSFYDNGVISIILEYMDGGSLADLLKKVATIPEPHLAAICKQVLKGLMYLHHERNIIHRDLKPSNLLINQRGEVKITDFGVSAIMESTSGQANTFIGTCNYMSPERINGSQCGYNYKSDIWSFGLILLECALGKFPYSPPDQSESWEIFELIEAIVDQPPPRGGSERYSKIMLAV* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0993 307 SUPERFAMILY Protein kinase-like (PK-like) 64 281 IPR011009 -
Lan12g0993 307 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 301 - -
Lan12g0993 307 Gene3D Transferase(Phosphotransferase) domain 1 150 307 - -
Lan12g0993 307 ProSiteProfiles Protein kinase domain profile. 70 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0993 307 Pfam Protein kinase domain 71 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0993 307 CDD PKc_MAPKK_plant_like 68 301 - -
Lan12g0993 307 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Lan12g0993 307 Gene3D Phosphorylase Kinase; domain 1 45 149 - -
Lan12g0993 307 SMART serkin_6 70 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0993 307 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Lan12g0993 307 PANTHER MAP KINASE KINASE 5 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0993 Lan-Chr12 16651401 16655873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0993 1 301 MAP Kinase Kinase Gene Family AT4G29810 65.595 2.41e-151 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lan12g0993 Pkinase 6.9e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0993 K20603 - gmx:547701 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0993 12 16651401 16655873 Lan1g1282 1 22591721 22596533 LSH
Lan12g0993 12 16651401 16655873 Lan15g0161 15 1777987 1782405 PCT
Lan15g0161 15 1777987 1782405 Lan12g0993 12 16651401 16655873 PCT