Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0977 ATGATGAATAGAAGGAACAAGTTCCCATTTACCCCATCTCAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAGTACATTGCTTCAGGTATTTCCATTCCACCTGATCTAATCTTCAGTATCAAAAGAAGCTACTTGGATTCTCCTATCTCTTCAAGGCTTTTGCCTCACCACCCTCAACACTTTCGGTGGAACTATTTGCCAATGGGTTTGGGAAGAAAAATAGACCCAGAGCCAGGTAGGTGCAGAAGAACAGATGGGAAAAAATGGAGGTGCTCAAAAGAGGCATACCCAGATTCTAAGTACTGTGAGAGACACATGCATAGGGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTAAAAACTACAAACAACACTTATGCTTCTTCAACTTCAACAACACCCTCTTCAATCTTATCAATAACCAAAAACAACCCTGCATTAGCCCCAACAACAGCTCAGAACATTTTCCACCACCACCCTCATCAACATTCTTCTTCTTCATATGGTTCTCATCTTCAGCAACACTCTTTCCTCTACCACCACCCTCCACCTTCAAGACCCTCTTCTACTGGTTTGTATTTTCAAGACAACAACAGTGCTTCCTTGTTTCTTGACAATGCTTCTTGCTCTCAGAATAACACTGACTCTAGGAACAGGTATGTTTATGGACAGAAAGAAGAGGTAGATGAACATGCTTTCTTCAATGAACCATCTGGGAATATGAGAAGCTTCTCTGCTTCTTCTATTGATGATTCTTGGAACCTCACACCACTTAGTATAAACTCCCCATCCTCTTCAAAACAGAGGAACTTCTCTGGTTTAACCAATAATGACAATGAATACTCTTACTTGCAACTTCAGAGTCTCAGTGACAACTCAAAACAACAACCAAAGCAAGATCAGGGTTTCTATAATGATATCAAGTGTGAAAAATTCATGAAACTTGGTGACAAAGAAGAACCACCTCAGCAGAAAACTGTTCATCGTTTCTTTGATGAATGGCCACCTAAAAGTAGAGGTACATGGCTTGATTTGGATGATAAATCTTCAACAACTCAACTTTCAATCTCTATTCCAACTTCTCATGATTTTGGAACTTTCAGTTCCAGAAACCAACGAGATGGTTGA 1137 0.4019 MMNRRNKFPFTPSQWQELEHQALIYKYIASGISIPPDLIFSIKRSYLDSPISSRLLPHHPQHFRWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTNNTYASSTSTTPSSILSITKNNPALAPTTAQNIFHHHPHQHSSSSYGSHLQQHSFLYHHPPPSRPSSTGLYFQDNNSASLFLDNASCSQNNTDSRNRYVYGQKEEVDEHAFFNEPSGNMRSFSASSIDDSWNLTPLSINSPSSSKQRNFSGLTNNDNEYSYLQLQSLSDNSKQQPKQDQGFYNDIKCEKFMKLGDKEEPPQQKTVHRFFDEWPPKSRGTWLDLDDKSSTTQLSISIPTSHDFGTFSSRNQRDG* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0977 378 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lan12g0977 378 Pfam WRC 78 120 IPR014977 -
Lan12g0977 378 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Lan12g0977 378 PANTHER - 4 355 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lan12g0977 378 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lan12g0977 378 PANTHER GROWTH-REGULATING FACTOR 5 4 355 - -
Lan12g0977 378 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0977 Lan-Chr12 16550559 16552902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0977 9 120 GRF Transcription Factor Family AT3G13960 71.429 8.18e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lan12g0977 WRC 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0977 - - gmx:100783524 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0977 12 16550559 16552902 Lan1g0427 1 3424527 3426958 LSH
Lan12g0977 12 16550559 16552902 Lan15g0173 15 1852670 1855822 PCT
Lan15g0173 15 1852670 1855822 Lan12g0977 12 16550559 16552902 PCT