Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0968 ATGACTGTGATGAAAATCACATGGAAATCCATCTTCCCAAGTTGCTATAAGGGTGATGATAATTACCAATCACCAAAGCCCAATAAAGTGGTATCTTCACCTCCAAAAACAACAAAGCCTGATGGTTCTTCAAGCAGGATCTCTGTGACTGATTTGAGTTTTCCAACCAAAACACTTTCAGAGGATCTGTCTATTTCTCTAGCAGGGTCTAACCTGCATGTTTTCACACTTGCTGAACTGAAGATTATAACACAAGGCTTCTCTTCAAGTAACTTTCTAGGAGAAGGAGGGTTTGGACCAGTGCATAAGGGGTTCATTGATGATAATCTTAGACCTGATCTCAAGGCTCAGCCTGTTGCAGTAAAGCTCTTAGATTTGGATGGATCTCAGGGTCATAAAGAGTGGTTGACTGAAGTTGTGTTTCTGGGTCAACTAAGGCATCCACACCTTGTGAATCTGATTGGATATTGCTGTGAAGAGGAACACAGGCTTTTGGTATATGAATATTTACCAAGAAGGAGCTTGGAGAATCAACTTTTTAGAAGATACTCAGGATCATTACCATGGTCAACAAGAATGAAGATAGCTGTTGGAGCTGCAAAGGGTCTAGCCTTTTTACATGAGGCACAGAAGCCAGTCATCTATAGAGATTTCAAAGCTTCAAACATATTGTTAGACTCTGATTACAGTGCAAAACTCTCAGATTTTGGCTTAGCAAAAGATGGCCCTGAAGGAGATAACACCCATGTTTCAACTAGAGTCATGGGCACCCAAGGCTATGCTGCCCCAGAATATGTCATGACAGGTCATTTGACATCAATGAGTGATGTGTATAGCTTTGGAGTGGTCCTATTGGAGCTACTAACAGGAAGAAGGTCAGTGGAGAAAGGGAGGCCACAAAGAGAGCAGAACCTAGTAGAATGGGCCAGGCCATATTTGAATGATTCAAGGAAACTTAGCAGAATAATGGATCCAAGGCTTGATGGACAATATTCTGATATAGGGGCAAAAAAAGCAGCAGCATTGGCTTATCTATGTCTCAGTCAAAGGCCAAAGAGTAGGCCTACAATGACCACAGTGGTCAAGACTCTAGAGCCACTACAAGATTGTAATGATATTCCAATTGGTCCCTTTGTTTACACAGTTCCAAGTGATAATGGTGAAGGGAATAAAGATGCAAAAGAAAGTGATGCACCTAAGGAGAGGAAGAATGAAAATGGTGGTCACCACCATCACCGGAGTCACCACCACAGCAACGGGCATAGGCATCATCATCCTCTCAGATCACCCAAGACATCAAACTCAAAGTTACAGAATGATATACACCAAAATGGTAGTAGTGGATTTACTTCAGCTGATACTTCCTTTGCATCAGAAGGCCAAGGAACCAAAGTTTAG 1398 0.4199 MTVMKITWKSIFPSCYKGDDNYQSPKPNKVVSSPPKTTKPDGSSSRISVTDLSFPTKTLSEDLSISLAGSNLHVFTLAELKIITQGFSSSNFLGEGGFGPVHKGFIDDNLRPDLKAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVNLIGYCCEEEHRLLVYEYLPRRSLENQLFRRYSGSLPWSTRMKIAVGAAKGLAFLHEAQKPVIYRDFKASNILLDSDYSAKLSDFGLAKDGPEGDNTHVSTRVMGTQGYAAPEYVMTGHLTSMSDVYSFGVVLLELLTGRRSVEKGRPQREQNLVEWARPYLNDSRKLSRIMDPRLDGQYSDIGAKKAAALAYLCLSQRPKSRPTMTTVVKTLEPLQDCNDIPIGPFVYTVPSDNGEGNKDAKESDAPKERKNENGGHHHHRSHHHSNGHRHHHPLRSPKTSNSKLQNDIHQNGSSGFTSADTSFASEGQGTKV* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0968 465 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0968 465 SUPERFAMILY Protein kinase-like (PK-like) 62 365 IPR011009 -
Lan12g0968 465 Gene3D Phosphorylase Kinase; domain 1 49 169 - -
Lan12g0968 465 MobiDBLite consensus disorder prediction 388 405 - -
Lan12g0968 465 MobiDBLite consensus disorder prediction 25 48 - -
Lan12g0968 465 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672|GO:0006468
Lan12g0968 465 MobiDBLite consensus disorder prediction 431 465 - -
Lan12g0968 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Lan12g0968 465 Gene3D Transferase(Phosphotransferase) domain 1 170 373 - -
Lan12g0968 465 MobiDBLite consensus disorder prediction 23 48 - -
Lan12g0968 465 MobiDBLite consensus disorder prediction 381 465 - -
Lan12g0968 465 MobiDBLite consensus disorder prediction 406 430 - -
Lan12g0968 465 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 33 421 - -
Lan12g0968 465 PANTHER OS01G0588500 PROTEIN-RELATED 33 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0968 Lan-Chr12 16501806 16504000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0968 73 364 Glycoside Hydrolase AT3G07070 51.525 2.64e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan12g0968 PK_Tyr_Ser-Thr 6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0968 - - gmx:100305397 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0968 12 16501806 16504000 Lan1g1304 1 22750971 22774766 LSH
Lan12g0968 12 16501806 16504000 Lan1g0435 1 3488134 3490181 LSH
Lan12g0968 12 16501806 16504000 Lan15g0179 15 1913069 1915500 PCT
Lan15g0179 15 1913069 1915500 Lan12g0968 12 16501806 16504000 PCT