Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0959 ATGTCGACCTTGTCGGAGATTTCGGATGTTTCCGGTCAGAAGCTGCCGGAGAAGTCTACGTTCTCTCAAACTTGTAGTTTGTTGAGCCAATTCCTCAGGGAGAAGGGTGGCTACGGTGATCTTAACTTTGGGATGACATGCACCTCTGAAACTAATGGGTCACCTGAGACATCTTGTCTCTCTGCAATGGACTTGTTTCCTACCAAAGAAAACAACATCACACCCCCAAACCTGATAACTATGGATTTGCTCTCTCCACCTACTGCTTATACCCCTCAGACAACAAAAGAGGTTCCAACTTTGATCAATCCAAGTGCATTTAAGTCTGTGGACAAAGAGCCCAAATCTGCACAATTGACAATCTTTTATGGTGGCCAAGTTATTGTATATGATGATTTTCCTGCTAACAAAGTTGAGGAGATAATGTCCCTTGCTAGAAAAGGAATCTCCCAAAGTCACAATACATCTGTATATGGTCATACTCTGACTCAGCCTTCAATGATTCCTAATACACCAATTGTTTGTGATCTACCAATTGCTAGGAAAGCTTCCCTTCATCGTTTCCTGGAGAAGAGGAAGGATAGAATTACTGCCAAAGCTCCATATCAAACAAGCAATCCCATGGCAGCACCTACTAAGCCAGCTGAATCAATGGCATGGCTCGGGTTGGCTGCTAAATCAACTCTCTGA 690 0.4348 MSTLSEISDVSGQKLPEKSTFSQTCSLLSQFLREKGGYGDLNFGMTCTSETNGSPETSCLSAMDLFPTKENNITPPNLITMDLLSPPTAYTPQTTKEVPTLINPSAFKSVDKEPKSAQLTIFYGGQVIVYDDFPANKVEEIMSLARKGISQSHNTSVYGHTLTQPSMIPNTPIVCDLPIARKASLHRFLEKRKDRITAKAPYQTSNPMAAPTKPAESMAWLGLAAKSTL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0959 229 Pfam Jas motif 178 203 IPR018467 -
Lan12g0959 229 ProSiteProfiles Tify domain profile. 112 147 IPR010399 -
Lan12g0959 229 PANTHER PROTEIN TIFY 10A 14 224 - -
Lan12g0959 229 SMART tify_2 112 147 IPR010399 -
Lan12g0959 229 Pfam tify domain 113 145 IPR010399 -
Lan12g0959 229 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 14 224 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0959 Lan-Chr12 16446447 16448923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0959 1 226 Tify Gene Family AT1G19180 39.062 1.02e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lan12g0959 tify 5.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0959 K13464 - gmx:100802800 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0959 12 16446447 16448923 Lan1g1316 1 22866242 22868277 LSH
Lan12g0959 12 16446447 16448923 Lan1g0443 1 3572478 3574732 LSH
Lan12g0959 12 16446447 16448923 Lan15g0188 15 2014348 2016921 PCT
Lan12g0959 12 16446447 16448923 Lan14g0104 14 1376743 1379156 PCT
Lan15g0188 15 2014348 2016921 Lan12g0959 12 16446447 16448923 PCT
Lan14g0104 14 1376743 1379156 Lan12g0959 12 16446447 16448923 PCT