Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0958 ATGGTGAAACCAAACAATGAAAATACGAAGGAACAAAGTTTTCAGTTCAAGGGAATTCGAAAGAGGAAATGGGGCAAATGGGTATCTGAAATAAGACTACCCAATAGCCGCCAGAGAATTTGGTTGGGTTCCTTTGACTCCGCCGTCAAGGCCGCGCGTGCTTTCGACGCTGCCACCTTCTGCTTACGTGGCCGAAACGCTAGGTTTAATTTCCCTGATGACCCACCTAACATCGCCGGCGGCAACTCCATGACGCCCACTCAAATTCAAGCTGCCGCAGCCAGTTTTGCAAATTCGGAGCCCCATGTGAGAAATTCGGGTCGACCCGATAAATCTGAATCTCACGTGGAATGTTCTTCGGTGGAGACAATGTTGTTGCATACGGAGTCACCTTCCCCTTGTTTTTCAGAAGGGAATGTTCAAACGGACAGTGACGTCACCGTTAACGATTTGTTTCCAGATTTGATGGCACCAATCGGGTCGGGTAATTTTGTAACCGATTATGGGATGTTCCCGGGTTTCGATGATTTCAGTGGTGAGTACTATGTTCCTGAAATGGAGAGTGTTAATTATTATGGAGAAGAAAACATTGATGGGTTTATAGTTGAGGACTCTTTTTTGTGGAATTTCTAA 633 0.4581 MVKPNNENTKEQSFQFKGIRKRKWGKWVSEIRLPNSRQRIWLGSFDSAVKAARAFDAATFCLRGRNARFNFPDDPPNIAGGNSMTPTQIQAAAASFANSEPHVRNSGRPDKSESHVECSSVETMLLHTESPSPCFSEGNVQTDSDVTVNDLFPDLMAPIGSGNFVTDYGMFPGFDDFSGEYYVPEMESVNYYGEENIDGFIVEDSFLWNF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0958 210 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Lan12g0958 210 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Lan12g0958 210 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Lan12g0958 210 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 210 - -
Lan12g0958 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 210 - -
Lan12g0958 210 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Lan12g0958 210 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Lan12g0958 210 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
Lan12g0958 210 Pfam AP2 domain 16 64 IPR001471 GO:0003700|GO:0006355
Lan12g0958 210 SUPERFAMILY DNA-binding domain 16 73 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0958 Lan-Chr12 16437209 16438293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0958 15 210 AP2-EREBP Transcription Factor Family AT1G19210 44.000 2.07e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan12g0958 AP2 6.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0958 - - gmx:732656 273.863