Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0957 ATGAAGGCTCCATCAAATGGTTATTTGCCTAATTCAGTTGAAGTAGAAAGGAAGACCATCAATTCAGAGTTGTGGCATGCTTGTGCCGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAACAAGTTGCGGCTTCCATGCAAAAGCAGACCGACTTCATTCCCAGTTACCCTGACCTTCAATCCAAGTTGATTTGCAGGCTTCAAAATGTTGCCTTGCATGCTGATCCTGAAACTGACGAGGTTTATGCACAGATGACCCTTCAAACTATAAACAAATATGACAATGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAGCCGACAGCCTACTGAATTCTTTTGCACAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCCGTGCCTCGTAGGGCAGCTGAGAAAATATTCCCTCCTCTGGATTATTCAATGCAACCTCCTGCTCAGGAGCTTGTTGCCAAAGATTTGCATGACACCACATGGGCATTTAGACATATTTATCGCGGACAACCCAAGAGGCACCTATTGACTACTGGATGGAGTGTATTTGTCAGCACAAAAAGACTGTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAGACAGAACCTTCTTTTAGGTTTAAGGCGAGCTAACAGACAACAGCCAGCACTGTCTTCATCGGTAATATCCAGTGACAGCATGCATATTGGTATTCTTGCTGCTGCAGCAAATGCTGCTGCAAATAACAGCCCATTTACTATATTTTACAATCCAAGGGCCAGCGCCTCTGAATTTGTTATTCCATTTGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCACTCGGAATGAGATTTAGAATGATGTTTGAGACCGAGGAATCAGGAGTGCGAAGATACATGGGTACAATCACTGGGGTCAGTGACTTGGATCCTGTCCGATGGAAAAGTTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGCCCAAGCAGAGTTTCGCTTTGGGAAATTGAGCCAGTAGTATCTCCTTTCTACATTTGCCCACCTCAATTTTTAAGGTCCAGGTTCCCCAGGCAACCAGGAATGTCAGATGATGGGTCTGATATAGAAAATGCTTTCAAGAGAGTGATGCCCTGGCTTGGAGAAGACTTTGGCATGAATGATCCCTCAAATTCAGTCTATCCTGGTTTGAGTTTAGTCCAGTGGATGAGCATGCAGCAGAATAATCAATTCTCTGCTGCTCAACCAGGATTTTTCCCCGCTATGCTTTCACCTAATACTATGCACAATAACCTTGGAACTGATAACCCATCCAAGTTATTGAGTTTTCAAGCTCCTGCCCTCTCTGCACCAAATCTTCAGCTTAACAAATCCAATTTTCCAAATCAAATCAACCAATCGCAACAGTCCCCAACTTCATGGCCTCAGCTGCAGCAGCAACAACAGCTGCATCAGCAGAAGCAGCAACAGCTGCACCAACAACTTGAACAACAGCAGCAGCTGCTGCTGCAGAATTCGCAACAGCAACAGCTGCAATCATTGTTGCAAACGCCAGTAAACCAACTCCAGCAGCAGACACAACAACAGCTTCCTGAACCACAAAACATGCCATTACTCCAGCAACAACAGCCCCAACTACCTCAGAAATTAGGACAGCAGCCACAGTCGTATCAACATGCTATTGTGAATAATGGCACAGTTTCTTCTAACCAGAATACAAATCAGTTTGTACCACAACCGGTAGCCTACTCTCAGCTTCAGCAACAGCAATTACTTTCAGGAGATATCCCACCCCAGCAAAGTATCCAATCGGCTAGTAAGAATACATTCCCACTGCCAACCCTACCACAAGACTCACAATCTCAGCAACAGATAGACCAGCAAGCAAGTCTCTTACAAAGGCAGCAGCAACAGACACAGCTTCAACAGTCTCCACTTCAGTTACTGCAACAAACACTGTCACAGAGGGTGATTCAGCAACCACAAATGACTCAAATGTCACTACAGAACCCTTCAGAGAAACAAGTACAGCTACAGTTTCTACAGAAATGGCAGCAGCAGCAGCAACAACAGCATCAGCATCTTCTTTCTATGTCTAGCCCACTTTTGCAATCTCAGCTTCTACAGCAACAAAATACTCACCAACAAAACCAGCAATTACCACAACAAAATCTATCTCGGCATGAGCCTCAACAGCTTGGCATGGGTAATAATGCATTACCAACAAAGAAGCCTCTCAACAGCAATAACTTCACTTCTTCTTCAGCTCTTATGCAATCAAAGCAGCTGCCTGTCAACCAAATCCAAAATACACAGAAAGCCCTGACAATCACTAGAGCTCCCTCTACTCTCACAGATGGAGATGCCCCATCATGCTCAACCTCGCCGTCTACGAATAACTGCCAGATATCTCCATCAAGCCTCCTGAAAAGAAATCATCAAGTGTCAGCTACATTCGGGGGGAGTTTGGTAGTTGATCCCACATGTAATCTGATACAGGAGCTTTACAGTAAGTCTGACATGCAGATTAAACATGAGTTCTCCAGTGTAAATGGACCTGACCAGACTAAACATAAAGGGACAATTACTGATCATCTGGAAGCTTCTTCTTCTGGAACATCTTACTGTCTTGGTCCTGGTAGTGTCCAGGAAAACCTACCACTTCCCAACTTCTTCATTGATGGGGATATCCAATCACACCCTAGAAACAATCTACCATTTGATTCTAATCTTGATGTACTAGCATCTGATACAATGCTTTTAAAAGGGTCAGACTCTCAAGGAGATCTTCAATATTTGTTGGCTAATTATGGTGGTGCTCCACGGGACATTAAAACTGAGCTGTCCACTGCTGACATCAGCTCACAGTCGTTTGGATTGCCAAATGTGTCTTTTAATCCAGCTTGCTCAAGTGATGTTGGCATAAATGATATTGGGGTTTTGAATAATAGCGTGCGGGCTAGCCAGACTCAACGAGTGCGAACATATACCAAGGTGCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTCACGCGTTACAAGGGATATGATGAACTGCGGTATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCATCGGACTGAGTGGAAACTAGTATATGTGGATCATGAAAGTGACATTCTGCTTGTTGGTGATGATCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTCTCATCTACTGAGGTGCAGCAAATGAACTTAGATGGGGATTTAGGTAATGTTCCAATCCCCAATCAAGCTTCTAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCTGCCTCATTTAACAGATAA 3417 0.441 MKAPSNGYLPNSVEVERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPDLQSKLICRLQNVALHADPETDEVYAQMTLQTINKYDNEAILASDMGLKQSRQPTEFFCTTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDTTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDERQNLLLGLRRANRQQPALSSSVISSDSMHIGILAAAANAAANNSPFTIFYNPRASASEFVIPFAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGVSDLDPVRWKSSQWRNLQVGWDESTAGERPSRVSLWEIEPVVSPFYICPPQFLRSRFPRQPGMSDDGSDIENAFKRVMPWLGEDFGMNDPSNSVYPGLSLVQWMSMQQNNQFSAAQPGFFPAMLSPNTMHNNLGTDNPSKLLSFQAPALSAPNLQLNKSNFPNQINQSQQSPTSWPQLQQQQQLHQQKQQQLHQQLEQQQQLLLQNSQQQQLQSLLQTPVNQLQQQTQQQLPEPQNMPLLQQQQPQLPQKLGQQPQSYQHAIVNNGTVSSNQNTNQFVPQPVAYSQLQQQQLLSGDIPPQQSIQSASKNTFPLPTLPQDSQSQQQIDQQASLLQRQQQQTQLQQSPLQLLQQTLSQRVIQQPQMTQMSLQNPSEKQVQLQFLQKWQQQQQQQHQHLLSMSSPLLQSQLLQQQNTHQQNQQLPQQNLSRHEPQQLGMGNNALPTKKPLNSNNFTSSSALMQSKQLPVNQIQNTQKALTITRAPSTLTDGDAPSCSTSPSTNNCQISPSSLLKRNHQVSATFGGSLVVDPTCNLIQELYSKSDMQIKHEFSSVNGPDQTKHKGTITDHLEASSSGTSYCLGPGSVQENLPLPNFFIDGDIQSHPRNNLPFDSNLDVLASDTMLLKGSDSQGDLQYLLANYGGAPRDIKTELSTADISSQSFGLPNVSFNPACSSDVGINDIGVLNNSVRASQTQRVRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPHRTEWKLVYVDHESDILLVGDDPWEEFVSCVQSIKIFSSTEVQQMNLDGDLGNVPIPNQASSGTDSGNAWRGQYDDNSAASFNR* 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0957 1138 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan12g0957 1138 SUPERFAMILY CAD & PB1 domains 1024 1090 - -
Lan12g0957 1138 MobiDBLite consensus disorder prediction 470 498 - -
Lan12g0957 1138 PANTHER AUXIN RESPONSE FACTOR 19 1 1126 - -
Lan12g0957 1138 SUPERFAMILY DNA-binding pseudobarrel domain 116 253 IPR015300 -
Lan12g0957 1138 CDD B3_DNA 125 217 IPR003340 GO:0003677
Lan12g0957 1138 SMART B3_2 126 228 IPR003340 GO:0003677
Lan12g0957 1138 ProSiteProfiles PB1 domain profile. 1011 1104 IPR000270 GO:0005515
Lan12g0957 1138 MobiDBLite consensus disorder prediction 611 646 - -
Lan12g0957 1138 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Lan12g0957 1138 Gene3D - 1006 1100 - -
Lan12g0957 1138 Gene3D - 289 361 - -
Lan12g0957 1138 Coils Coil 494 529 - -
Lan12g0957 1138 MobiDBLite consensus disorder prediction 1109 1138 - -
Lan12g0957 1138 MobiDBLite consensus disorder prediction 725 768 - -
Lan12g0957 1138 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1126 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan12g0957 1138 Pfam AUX/IAA family 1006 1097 IPR033389 -
Lan12g0957 1138 MobiDBLite consensus disorder prediction 803 822 - -
Lan12g0957 1138 MobiDBLite consensus disorder prediction 1104 1138 - -
Lan12g0957 1138 Gene3D - 124 227 IPR015300 -
Lan12g0957 1138 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0957 Lan-Chr12 16427281 16434584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0957 1 487 B3 DNA Binding Superfamily AT1G19220 78.645 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan12g0957 AUX_IAA 4.2e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0957 K14486 - gmx:100805456 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0957 12 16427281 16434584 Lan1g0446 1 3588196 3595697 LSH
Lan12g0957 12 16427281 16434584 Lan15g0190 15 2043693 2050653 PCT
Lan12g0957 12 16427281 16434584 Lan14g0101 14 1340724 1351366 PCT
Lan15g0190 15 2043693 2050653 Lan12g0957 12 16427281 16434584 PCT
Lan14g0101 14 1340724 1351366 Lan12g0957 12 16427281 16434584 PCT