Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0948 ATGGGAAGAGAAATAGAAGAGGAGCAAGTAGGTTACACAGTGGAACAGCTTGTAGGCCTTAATCGTTATAATCCTGATATTCTTCCTGATCTCGAAAATCATGTTAACGACCAGGTTTCATCACAAATATACAGTTTGGATGCAAATCTCTGTCTCCTTCGCCTCTACCAGTTTGAACCTGAGAAAATGAGTTCTCAGATTGTTGCCCGCATATTGATTAAGGCTCTCATGGCAATGCCTGCTCCAGACTTCAGCCTGTGTCTCTTTTTGATTCCAGAACGTGTGCAAATGGAGGAGCAATTCAAGACACTGATTGTTCTGTCTCACTATTTGGAGACTGGAAGGTTTCACCAGTTCTGGGATGAAGCAGCAAAAAATCGTCACATTGTTGAAGCTGTGCCTGGATTTGAGCAGGCAATTCAAAGCTATGCAATTCATGTCCTTTCCTTGACTTATCAAAAGGTTCCTAGAACTGTGCTTGCTGAGGCTATAAACAGAGAAGGTTTATCCTTGGACAAATTCCTCGAACACCAAGTAGCCACTTCTGGCTGGGCGATTGAAAAGGGCAGCCAAGGAAGGGGTCAACTTATTGCCCTTCCTAGAAATGAATTTAATGACCCAAATTCAAAGAAAAACATTGCAGATAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGCTGA 693 0.4257 MGREIEEEQVGYTVEQLVGLNRYNPDILPDLENHVNDQVSSQIYSLDANLCLLRLYQFEPEKMSSQIVARILIKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFHQFWDEAAKNRHIVEAVPGFEQAIQSYAIHVLSLTYQKVPRTVLAEAINREGLSLDKFLEHQVATSGWAIEKGSQGRGQLIALPRNEFNDPNSKKNIADSVPLEHITRIFPILS* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0948 230 Pfam CSN8/PSMD8/EIF3K family 64 190 IPR033464 -
Lan12g0948 230 SUPERFAMILY "Winged helix" DNA-binding domain 134 227 IPR036390 -
Lan12g0948 230 ProSiteProfiles PCI domain profile. 44 203 IPR000717 -
Lan12g0948 230 SUPERFAMILY ARM repeat 6 132 IPR016024 -
Lan12g0948 230 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT K 6 229 - -
Lan12g0948 230 Gene3D ARM repeat; domain 1 6 122 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Lan12g0948 230 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 6 229 IPR009374 GO:0003743|GO:0005737|GO:0005852
Lan12g0948 230 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 5 230 IPR009374 GO:0003743|GO:0005737|GO:0005852
Lan12g0948 230 Gene3D - 125 229 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0948 Lan-Chr12 16347082 16349369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0948 1 230 Eukaryotic Initiation Factors Gene Family AT4G33250 74.138 3.62e-125 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0948 K15028 - gmx:100306445 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0948 12 16347082 16349369 Lan1g0458 1 3788401 3799060 LSH