Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0942 ATGGCCTTTCAAGATTTCGACCTCATCTCGGAACGGCGTAGAAATGACAATAGACAAAAGACTAGGAAGAGAGTCATCATTGGTGTTGTTTCTTCCATTCTCCTTGTTGGTCTAATAGGTTGTGCATTCTTTGTTGCTACCACACATTATGGTTTTGGACAGGAAAAAAATGAAGCTTCTTCCGAAAGCAACCATATTACACATTCTGAAAGGGTTGTGAAGATGGTGTGTAGCTCAGCAGATTATAAACAAAAATGTGAAGGACCATTGAGTGAGGCTGTGAAGAAGGACCCTAATCTCACACATCCTAAAGATATTCTCAAACTCTATGTTAAATTTGCTGAGGAAGAGGTTAGCAAGGCCTTTAATAAAACCAACACCTTGAAGTTTGAGTCCAAGGAAGAGAAAGGTGCATTTGAAGATTGCAAGCAATTGTTTCGAGATGCTAAGGAAGATTTGGCAACCTCTTTATCTGAACTTGGTAGGGTTGATTTCAATAAATTTTCGTCGAAGAGTCCTGATTTTAATAGTTGGTTAAGTGCTGTTATCTCTTATCAACAAACATGTATTGATGGTTTTCCTGAAAATTCTAAGTTGAAGAAAGATCTTAATACTCTATTCAAGGATTCTAGAGAATTCATTAGCAACTCCCTTGCCATTGTGCAAAAGGTTGGATCACTCCTTTCAACATTCCAGTCCATTGGTGGTCGCTTGTTGTCGGAGAATTCCGAGTCCCATGTTTATTCTTTGGATGAAGAAGGTTACCCTGAATGGTTGAGACATGGGGATAGAAGGGTTTTGAAGGCTGCTGATGACAAACCTACACCTAATGTTACTGTTGCAAAAGATGGCAGTGGAAACTTTAAAACCATCTCTGAAGCTTTGAAAGCCATCCCTGAAACATATAAGGGAAGATATGTGGTTTTTGTCAAAGAAGGAGTGTATGATGAAACAGTCACAATAACAAAGAAAATGCAAAATATAACCCTCTATGGTGAAGGATCACAAAAGAGTATTATCACTGGCAACAAAAACTTCAGGGATGGAGTTAGGACTTTCCTAACTGCAAGTTTTGTTGTACTTGGAGAGGGATTTATAGGCAAAGCAATGGGATTCAGAAACACTGCTGGACCAGACGGACATCAAGCAGTGGCTGCTAGAGTGCAAGCAGATCGTGCCGTGTTCGCCAACTGCCGCTTCGAGGGATACCAGGACACTCTATACACTCAAACCCACAGACAATTCTACCGTAGTTGCATCATTACAGGGACCATTGATTTCATCTTTGGTGATGCAGCTGTTGTGTTCCAGAACTGCATCATGAATGTTAGAAAGCCACTGGACAACCAGCAGAACATGGTCACAGCCCAAGGGAGAATGGACAAGCAACAAACCACTGGCATTGTTCTTCAAAAATGTCATATCAAAGCCGATGATTCGTTGGTTCCAGTGAAGGACAAAATCAGGAGTTACCTTGGCAGGCCATGGAAAGAGTACTCAAGAACAATTGTTATGGAATCTGAGATAGATGAGTTCATTCACCCTGAAGGATGGACACCTTGGGCTGGTAACTTCGCACTCGACACATTGTATTACGCCGAGTTCAACAACACAGGACCTGGTGCTAGCACCAAAGCTAGGGTCAATTGGCCTGGCTACAAGGTTATTAAGAAGGAGGATGCTACCAAGTTCACAGTGACTCAATTCTTGAAAGGCACTTGGGTTCAAGGCACAGGTGTACCTTCAATTCAAGGAATGTATTATTGA 1767 0.4154 MAFQDFDLISERRRNDNRQKTRKRVIIGVVSSILLVGLIGCAFFVATTHYGFGQEKNEASSESNHITHSERVVKMVCSSADYKQKCEGPLSEAVKKDPNLTHPKDILKLYVKFAEEEVSKAFNKTNTLKFESKEEKGAFEDCKQLFRDAKEDLATSLSELGRVDFNKFSSKSPDFNSWLSAVISYQQTCIDGFPENSKLKKDLNTLFKDSREFISNSLAIVQKVGSLLSTFQSIGGRLLSENSESHVYSLDEEGYPEWLRHGDRRVLKAADDKPTPNVTVAKDGSGNFKTISEALKAIPETYKGRYVVFVKEGVYDETVTITKKMQNITLYGEGSQKSIITGNKNFRDGVRTFLTASFVVLGEGFIGKAMGFRNTAGPDGHQAVAARVQADRAVFANCRFEGYQDTLYTQTHRQFYRSCIITGTIDFIFGDAAVVFQNCIMNVRKPLDNQQNMVTAQGRMDKQQTTGIVLQKCHIKADDSLVPVKDKIRSYLGRPWKEYSRTIVMESEIDEFIHPEGWTPWAGNFALDTLYYAEFNNTGPGASTKARVNWPGYKVIKKEDATKFTVTQFLKGTWVQGTGVPSIQGMYY* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0942 588 CDD PMEI-like_3 76 223 - -
Lan12g0942 588 SMART PMEI_2 68 220 IPR006501 GO:0004857
Lan12g0942 588 Gene3D - 271 586 IPR012334 -
Lan12g0942 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 224 IPR035513 -
Lan12g0942 588 Pfam Plant invertase/pectin methylesterase inhibitor 73 220 IPR006501 GO:0004857
Lan12g0942 588 Pfam Pectinesterase 277 572 IPR000070 GO:0030599|GO:0042545
Lan12g0942 588 SUPERFAMILY Pectin lyase-like 275 584 IPR011050 -
Lan12g0942 588 TIGRFAM PME_inhib: pectinesterase inhibitor domain 66 223 IPR006501 GO:0004857
Lan12g0942 588 PANTHER PECTINESTERASE 14 586 - -
Lan12g0942 588 PANTHER PECTINESTERASE 14 586 - -
Lan12g0942 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 225 IPR035513 -
Lan12g0942 588 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0942 Lan-Chr12 16304389 16306723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0942 1 587 Carbohydrate Esterase AT2G26450 47.200 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0942 - - gmx:100784679 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0942 12 16304389 16306723 Lan15g0206 15 2222143 2224651 PCT
Lan12g0942 12 16304389 16306723 Lan14g0089 14 1205707 1208225 PCT
Lan12g0942 12 16304389 16306723 Lan3g0951 3 20792276 20794868 PCT
Lan15g0206 15 2222143 2224651 Lan12g0942 12 16304389 16306723 PCT
Lan14g0089 14 1205707 1208225 Lan12g0942 12 16304389 16306723 PCT
Lan3g0951 3 20792276 20794868 Lan12g0942 12 16304389 16306723 PCT