Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0938 ATGGGTTTCTATTCTGATGAAAAACTCACTACAATCTCTGGTTTCACAATAGGTCAAGCCATATATGAAGCAGCTCTAATCATAGCAGTTCTAAGATGGATCCTATGCTTGGTTTTAAAAGTTATGAGGGATAGAAACAATGAATCTCTTCACACACCATCTGAAACAGAACCCTCTTGTGTCTCTTCTCAAATGATAAGGGACAACACTCTCTTGTTGACAACCTTTGGTGAGATTATGGAGAAGCTGCAGCCAGAAGAAACACAAGACACAACATGTGCTGTTTGTTTGAATCATCTGAACATAGAAGATGAGGTTAGAGAGTTAATGAACTGTTACCATGTGTTCCACAAAGAATGCATAGATACATGGTTGGAACATGACCATGATAATCATAACCCTACTTGTCCACTATGTAGAGCACCTTTGTTAACTCCTTGTTGTTTCTCATCATCATCATCATCTGAGTCCTCTACTTGTGTTCCTCCTACTCAACCTAGTTGGGCTGTGGAAAGACTTCTATATCTCTTTGGGGATGATCTTATGCCTTGTTAA 555 0.391 MGFYSDEKLTTISGFTIGQAIYEAALIIAVLRWILCLVLKVMRDRNNESLHTPSETEPSCVSSQMIRDNTLLLTTFGEIMEKLQPEETQDTTCAVCLNHLNIEDEVRELMNCYHVFHKECIDTWLEHDHDNHNPTCPLCRAPLLTPCCFSSSSSSESSTCVPPTQPSWAVERLLYLFGDDLMPC* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0938 184 PANTHER RING ZINC FINGER PROTEIN-RELATED 13 182 - -
Lan12g0938 184 SUPERFAMILY RING/U-box 85 146 - -
Lan12g0938 184 ProSiteProfiles Zinc finger RING-type profile. 93 140 IPR001841 -
Lan12g0938 184 Pfam Ring finger domain 92 140 IPR001841 -
Lan12g0938 184 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 182 - -
Lan12g0938 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 145 IPR013083 -
Lan12g0938 184 SMART ring_2 93 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0938 Lan-Chr12 16274007 16274847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0938 13 181 C3H Transcription Factor Family AT5G20885 43.956 2.24e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0938 K16281 - gmx:111138523 240.35