Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0935 ATGGAAACATTAGAACTAATTGATGCTCATCAAACTCAGTCATCATCATCTTCATCTTCTTCTATTGATAGCAACAACCACCCTTCTTCTAAGACACCACCACCCTCTTCCTCTTCATCTTTGTGTCTCTCAGGTGTCTGCATAAATATTGATAGCACCAAAAAAACTGATTTAAGCACTGACCTCAGACTTGGTCTTAGTATATGTCAATCTTCTCAATCTGAATTAGCTTTCAATTCTTCCCAAAGGGAGCATAGTTATGATTGGCCACCAATTAAGTCCATATTCAGGAGCACCCTTGTTGAGAAACAAAACCATCATAGACCCTCTTTGTTTGTTAAAGTCTACATGGAAGGCATTCTCATAGGTAGAAAATTGAATCTGATGGCACACCATAGCTATGATGGACTAGTAAAAGCTCTCGGTCATATGTTTAGGACCACCATTCTTAACCCTAACTCCCATCCAAATAATTATGGGAATTTTCATTTTCTAACTTATGAGGATAAAGAAGGGGACTGGCTGATGGTTGGAGATGTACCATGGGAGATGTTCTTGACTAGTGTGAAGAGGCTGAGGATCATAAGAGCTGACAGATGCTAG 603 0.3947 METLELIDAHQTQSSSSSSSSIDSNNHPSSKTPPPSSSSSLCLSGVCINIDSTKKTDLSTDLRLGLSICQSSQSELAFNSSQREHSYDWPPIKSIFRSTLVEKQNHHRPSLFVKVYMEGILIGRKLNLMAHHSYDGLVKALGHMFRTTILNPNSHPNNYGNFHFLTYEDKEGDWLMVGDVPWEMFLTSVKRLRIIRADRC* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0935 200 ProSiteProfiles PB1 domain profile. 110 199 IPR000270 GO:0005515
Lan12g0935 200 MobiDBLite consensus disorder prediction 1 41 - -
Lan12g0935 200 Gene3D - 104 200 - -
Lan12g0935 200 SUPERFAMILY CAD & PB1 domains 106 194 - -
Lan12g0935 200 Pfam AUX/IAA family 74 197 IPR033389 -
Lan12g0935 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 200 IPR003311 GO:0005634|GO:0006355
Lan12g0935 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 16 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0935 Lan-Chr12 16253978 16255618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0935 113 200 B3 DNA Binding Superfamily AT2G46530 35.227 3.81e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan12g0935 AUX_IAA 6.7e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0935 K14484 - gmx:100818083 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0935 12 16253978 16255618 Lan12g0935 12 16253978 16255618 ECH
Lan12g0935 12 16253978 16255618 Lan1g1336 1 23065728 23067025 LSH