Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0925 ATGGCATCTGATCTGAATTCCGGGTTGTTGAAGAAAACGTCTGTTTTTGGGTTGAAAGCATGGGAGTTAATGGGATTAATAGTTGGAATGTTCATCATAGTCATTCTTGTGGTGCTATCAATATGTCTTTCATCAAGAAAGAAATCCAGAAGAGTCAATGGCATGCTTCCCCTTAGCCAAATGTTATCTGTTACAGAAGTGATCAAAGAGATTAGAGTTGATCAAGGATCAGCAAATAATCATCCTCAGAATGGAGCTTTTATGAGCCTGTATGACAAATATAGTGACAGGAATTCCGAAAAGGTTACGATCATAACAAAAAATGGGGATAATAGCAGTCATTCAGGTTCATTTGTTCATTTCGAGAAAGATGCTTATGGCTCTCAGTCAGGTGAAGAAAGTGGTGAGAAGTCTGTTTATAGGTCTTCTTCGCATCCGATAACCGCACCATCCCCTTTGTCTGGTCTGCCTGAATTCTCTCAGCTTGGCTGGGGGCACTGGTTTACATTGAGGGACCTGGAAGTTGCAACAAACAGGTTTTCAAAAGACAATATTATCGGCGAAGGTGGATATGGAGTTGTTTATCGAGGCCAACTAGTCAATGGAAGTCCTGTAGCTGTTAAGAAGCTTCTTAATAATCTAGGACAAGCTGAAAAGGAATTCAGGGTGGAAGTTGAGGCTATTGGTCATGTAAGGCATAAGAACTTGGTCAGACTTTTGGGCTATTGCATTGAAGGCACTCACAGGTTGTTGATTTATGAGTATGTTAACAATGGCAATTTAGAACAATGGCTTCATGGAGCCATGCGGCAGTATGGTTTTCTTACTTGGGATGCCCGGATTAAAATTCTCCTTGGAACAGCTAAAGCGCTGGCTTATTTGCATGAGGCAATTGAGCCTAAAGTTGTACATCGAGACATAAAGTCAAGTAATATTCTAATTGATGATGACTTCAATGCCAAAATATCTGACTTTGGGCTTGCCAAGTTACTAGGTGCTGGAAAAAGTCATATCACAACTAGAGTAATGGGCACTTTTGGATATGTGGCTCCAGAATATGCCAATTCTGGCTTACTAAACGAAAAGAGTGATGTTTATAGTTTTGGAGTATTGCTTCTTGAAGCAATTACTGGAAGAGACCCAGTGGATTATAGCCGACCAACAGCTGAGGTAAATTTGGTTGATTGGCTCAAGTTGATGGTAGGGAGTAGGCGTGCAGAAGAGGTGGTGGACCCCAACATTGAAACCAGGCCATCAACAAGTTCCCTTAAACGAGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCGTATTCTGAGAAAAGACCAAAGATGAGTCAAGTTGTTCGTATGCTTGAATCAGAGGAATATCCCATTCCCCGAGAGGATAGAAGACGGCGAAAGAGTCAGGCAGAAAATATAGAGATGGGGGCCCAGAAGGAGGCTTCGGATACAGATAAGAGTGATAATCCAGAATCCAATTCCAATGGCAGAAGGAAACAAAGGAAGTAG 1509 0.4182 MASDLNSGLLKKTSVFGLKAWELMGLIVGMFIIVILVVLSICLSSRKKSRRVNGMLPLSQMLSVTEVIKEIRVDQGSANNHPQNGAFMSLYDKYSDRNSEKVTIITKNGDNSSHSGSFVHFEKDAYGSQSGEESGEKSVYRSSSHPITAPSPLSGLPEFSQLGWGHWFTLRDLEVATNRFSKDNIIGEGGYGVVYRGQLVNGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLIYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPTAEVNLVDWLKLMVGSRRAEEVVDPNIETRPSTSSLKRALLTALRCVDPYSEKRPKMSQVVRMLESEEYPIPREDRRRRKSQAENIEMGAQKEASDTDKSDNPESNSNGRRKQRK* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0925 502 SMART serkin_6 180 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0925 502 PANTHER RECEPTOR-LIKE KINASE PLANT 2 502 - -
Lan12g0925 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Lan12g0925 502 Pfam Protein kinase domain 181 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0925 502 PANTHER OS01G0323000 PROTEIN 2 502 - -
Lan12g0925 502 ProSitePatterns Protein kinases ATP-binding region signature. 186 209 IPR017441 GO:0005524
Lan12g0925 502 MobiDBLite consensus disorder prediction 454 502 - -
Lan12g0925 502 Gene3D Transferase(Phosphotransferase) domain 1 256 469 - -
Lan12g0925 502 CDD STKc_IRAK 186 452 - -
Lan12g0925 502 MobiDBLite consensus disorder prediction 131 146 - -
Lan12g0925 502 SUPERFAMILY Protein kinase-like (PK-like) 164 459 IPR011009 -
Lan12g0925 502 Gene3D Phosphorylase Kinase; domain 1 160 255 - -
Lan12g0925 502 MobiDBLite consensus disorder prediction 453 502 - -
Lan12g0925 502 ProSiteProfiles Protein kinase domain profile. 180 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0925 502 MobiDBLite consensus disorder prediction 126 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0925 Lan-Chr12 16158750 16163968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0925 17 454 Trihelix Transcription Factor Family AT1G70460 41.535 8.14e-96 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lan12g0925 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0925 - - gmx:100793499 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0925 12 16158750 16163968 Lan12g0925 12 16158750 16163968 ECH
Lan12g0925 12 16158750 16163968 Lan1g1345 1 23151555 23156222 LSH
Lan12g0925 12 16158750 16163968 Lan15g0217 15 2348721 2352686 PCT
Lan15g0217 15 2348721 2352686 Lan12g0925 12 16158750 16163968 PCT